Evidence map›Paper›PMID 39290152›Full record

ArticleMolecular plant pathology2024

Comparative analysis of RNA interference and pattern-triggered immunity induced by dsRNA reveals different efficiencies in the antiviral response to potato virus X.

Khouloud Necira, Lorenzo Contreras, Efstratios Kamargiakis, Mohamed Selim Kamoun, Tomás Canto, Francisco Tenllado

Abstract readComparative Study
In one paragraph

Article in Molecular plant pathology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

6 authors.

Khouloud NeciraLaboratory of Molecular Genetics, Immunology and Biotechnology, Faculty of Sciences, University of Tunis El Manar, Tunis, Tunisia.
Lorenzo ContrerasDepartment of Biotechnology, Margarita Salas Center for Biological Research, Spanish National Research Council, Madrid, Spain.
Efstratios KamargiakisDepartment of Biotechnology, Margarita Salas Center for Biological Research, Spanish National Research Council, Madrid, Spain.
Mohamed Selim KamounLaboratory of Bioinformatics, Biomathematics and Biostatistics, Institut Pasteur de Tunis, Tunis, Tunisia.
Tomás CantoDepartment of Biotechnology, Margarita Salas Center for Biological Research, Spanish National Research Council, Madrid, Spain.ORCID 0000-0001-8017-6345
Francisco TenlladoDepartment of Biotechnology, Margarita Salas Center for Biological Research, Spanish National Research Council, Madrid, Spain.ORCID 0000-0002-5349-7642

Funding

CSIC Open Access Publication Support InitiativeMinistry of Higher Education and Scientific Research of Tunisia 2019-BALT-1077Ministry of Higher Education and Scientific Research of Tunisia 2019-BALT-1079Spanish Ministry of Science and Innovation PID2019-109304RB-I00Spanish Ministry of Science and Innovation PID2022-137691OB-I00
6 · The paper itself

Abstract

Antiviral responses induced by double-stranded RNA (dsRNA) include RNA interference (RNAi) and pattern-triggered immunity (PTI), but their relative contributions to antiviral defence are not well understood. We aimed at testing the impact of exogenous applied dsRNA on both layers of defence against potato virus X expressing GFP (PVX-GFP) in Nicotiana benthamiana. Co-inoculation of PVX-GFP with either sequence-specific (RNAi) or nonspecific dsRNA (PTI) showed that nonspecific dsRNA reduced virus accumulation in both inoculated and systemic leaves. However, nonspecific dsRNA was a poor inducer of antiviral immunity compared to a sequence-specific dsRNA capable of triggering the RNAi response, and plants became susceptible to systemic infection. Studies with a PVX mutant unable to move from cell to cell indicated that the interference with PVX-GFP triggered by nonspecific dsRNA operated at the single-cell level. Next, we performed RNA-seq analysis to examine similarities and differences in the transcriptome triggered by dsRNA alone or in combination with viruses harbouring sequences targeted or not by dsRNA. Enrichment analysis showed an over-representation of plant-pathogen signalling pathways, such as calcium, ethylene and MAPK signalling, which are typical of antimicrobial PTI. Moreover, the transcriptomic response to the virus targeted by dsRNA had a greater impact on defence than the non-targeted virus, highlighting qualitative differences between sequence-specific RNAi and nonspecific PTI responses. Together, these results further our understanding of plant antiviral defence, particularly the contribution of nonspecific dsRNA-mediated PTI. We envisage that both sequence-specific RNAi and nonspecific PTI pathways may be triggered via topical application of dsRNA, contributing cumulatively to plant protection against viruses.

Indexed as

NicotianaPlant DiseasesPlant ImmunityPotexvirusRNA, Double-StrandedRNA InterferenceInnate Immunity RecognitionRNA, Double-Strandedantiviral defencepattern‐triggered immunitypotato virus XRNA interferencetranscriptomic response to PTItranscriptomic response to RNAi

Identifiers

PMID39290152
PMCPMC11408873

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.