Evidence map›Paper›PMID 39289923›Full record

ArticleAnalytical chemistry2024

Spectral Zones-Based SHAP/LIME: Enhancing Interpretability in Spectral Deep Learning Models Through Grouped Feature Analysis.

Jhonatan Contreras, Andreea Winterfeld, Juergen Popp, Thomas Bocklitz

Abstract read
In one paragraph

Article in Analytical chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jhonatan ContrerasInstitute of Physical Chemistry (IPC) and Abbe Center of Photonics (ACP), Member of the Leibniz Centre for Photonics in Infection Research (LPI), Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany.ORCID 0000-0002-0491-9896
Andreea WinterfeldInstitute of Physical Chemistry (IPC) and Abbe Center of Photonics (ACP), Member of the Leibniz Centre for Photonics in Infection Research (LPI), Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany.
Juergen PoppInstitute of Physical Chemistry (IPC) and Abbe Center of Photonics (ACP), Member of the Leibniz Centre for Photonics in Infection Research (LPI), Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany.ORCID 0000-0003-4257-593X
Thomas BocklitzInstitute of Physical Chemistry (IPC) and Abbe Center of Photonics (ACP), Member of the Leibniz Centre for Photonics in Infection Research (LPI), Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany.ORCID 0000-0003-2778-6624

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interpretability is just as important as accuracy when it comes to complex models, especially in the context of deep learning models. Explainable artificial intelligence (XAI) approaches have been developed to address this problem. The literature on XAI for spectroscopy mainly emphasizes independent feature analysis with limited application of zone analysis. Individual feature analysis methods, such as shapley additive explanations (SHAP) and local interpretable model-agnostic explanations (LIME), have limitations due to their dependence on perturbations. These methods measure how AI models respond to sudden changes in the individual feature values. While they can help identify the most impactful features, the abrupt shifts introduced by replacing these values with zero or the expected ones may not accurately represent real-world scenarios. This can lead to mathematical and computational interpretations that are neither physically realistic nor intuitive to humans. Our proposed method does not rely on individual disturbances. Instead, it targets "spectral zones" to directly estimate the effect of group disturbances on a trained model. Consequently, factors such as sample size, hyperparameter selection, and other training-related considerations are not the primary focus of the XAI methods. To achieve this, we have developed a modified version of LIME and SHAP capable of performing group perturbations, enhancing explainability and realism while minimizing noise in the plots used for interpretability. Additionally, we employed an efficient approach to calculate spectral zones for complex spectra with indistinct spectral boundaries. Users can also define the zones themselves using their domain-specific knowledge.

Identifiers

PMID39289923
PMCPMC11447665

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.