Articlenpj biodiversity2024
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.
Erratum issuedAbstract read
In one paragraph
Article in npj biodiversity, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 37 papers.
0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
37 citing papers in PubMed.
- Transposable elements in the era of data science EMBO course: a call for open, accessible, and collaborative TE resources.Mobile DNA · 2026Article
- Genome Assemblies for Seven Families of Birds From the Global South.Molecular ecology resources · 2026Article
- The Vertebrate Genomes Project Phase I: A global reference genome resource.bioRxiv : the preprint server for biology · 2026Article
- An automated decision-making procedure for ranking and selecting species in biodiversity projects.npj biodiversity · 2026Article
- LepEU: A Consortium to Study the Population Genomics of Butterflies and Moths Across Europe.Evolutionary applications · 2026Article
- Big Spider, Big Genome: Chromosome-Level Genome of a North American Tarantula (Aphonopelma marxi) and Comparative Genomics Across 300 Million Years of Spider Evolution.Genome biology and evolution · 2026Article
- Genomic erosion across avian lineages in the context of their evolutionary history.Molecular biology and evolution · 2026Article
- Tracing the vertebrate selenoproteome evolution reveals expansions in ray-finned fishes and convergent depletions in tetrapods.BMC genomics · 2026Article
- Uncovering the genome evolutionary dynamics of the Mediterranean endemic palm Chamaerops humilis.BMC plant biology · 2026Article
- Genome report: de novo genome assembly of the greater Bermuda land snail, Poecilozonites bermudensis (Mollusca: Gastropoda), confirms ancestral genome duplication.G3 (Bethesda, Md.) · 2026Article
- From Permits to Samples: Addressing Key Challenges for High-Quality Reference Genome Generation in Europe.Molecular ecology resources · 2026Review
- BioSamples database: the global hub for sample metadata and multi-omics integration.Nucleic acids research · 2026Article
- From individuals to communities: How genomics is transforming biodiversity conservation.Genetics and molecular biology · 2026Article
- Unravelling the thread of Podarcis omics; insights into the genome and transcriptome of the Cretan wall lizard.Genes & genomics · 2026Article
- Overcoming the widespread flaws in the annotation of vertebrate selenoprotein genes in public databases.PLoS computational biology · 2026Article
- The chromosomal genome sequence of the spongeWellcome open research · 2026Article
- Biodiversity Genomics Research Practices Require Harmonising to Meet Stakeholder Needs in Conservation.Molecular ecology · 2025Review
- A chromosome-level assembly and functional genomic resources for the model annelidbioRxiv : the preprint server for biology · 2025Article
- ATAC-seq in Emerging Model Organisms: Challenges and Strategies.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2025Review
- Genomic insights into the population structure and adaptive variation of Mullus barbatus in the Mediterranean Sea.BMC ecology and evolution · 2025Article
Corrections and comments
- Erratum issued
Authors and funding
203 authors.
Ann M Mc Cartney *Genomics Institute, University of California, Santa Cruz, CA, USA. anmmccar@ucsc.edu.
Giulio Formenti *The Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
Alice Mouton *Department of Biology, University of Florence, Sesto Fiorentino, Italy.
Diego De PanisLeibniz Institut für Zoo und Wildtierforschung, Berlin, Germany.
Luísa S MarinsLeibniz Institut für Zoo und Wildtierforschung, Berlin, Germany.
Henrique G LeitãoDepartment of Biology, University of Antwerp, Antwerp, Belgium.
Genevieve DiedericksDepartment of Biology, University of Antwerp, Antwerp, Belgium.
Joseph KirangwaInstitute of Zoology, University of Cologne, Cologne, Germany.
Marco MorselliDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy.
Judit Salces-OrtizInstitute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Nuria EscuderoInstitute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Alessio IannucciDepartment of Biology, University of Florence, Sesto Fiorentino, Italy.
Chiara NataliDepartment of Biology, University of Florence, Sesto Fiorentino, Italy.
Hannes SvardalDepartment of Biology, University of Antwerp, Antwerp, Belgium.
Rosa FernándezInstitute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Tim De PooterNeuromics Support Facility, VIB Center for Molecular Neurology, VIB, Antwerp, Belgium.
Geert JorisNeuromics Support Facility, VIB Center for Molecular Neurology, VIB, Antwerp, Belgium.
Mojca StrazisarNeuromics Support Facility, VIB Center for Molecular Neurology, VIB, Antwerp, Belgium.
Jonathan M D WoodTree of Life, Wellcome Sanger Institute, Hinxton, Cambridge, UK.
Katie E HerronSchool of Biology and Environmental Science, University College Dublin, Belfield, Ireland.
Ole SeehausenAquatic Ecology & Evolution, Institute of Ecology & Evolution, University of Bern, Bern, Switzerland.
Phillip C WattsDepartment of Biological and Environmental Science, University of Jyvaskyla, Jyvaskyla, Finland.
Felix ShawThe Earlham Institute, Norwich Research Park, Norwich, UK.
Robert P DaveyThe Earlham Institute, Norwich Research Park, Norwich, UK.
Alice MinottoDigital Science, London, UK.
José M FernándezBarcelona Supercomputing Center; Spanish National Bioinformatics Institute, ELIXIR Spain, Getafe, Spain.
Astrid BöhneLeibniz Institute for the Analysis of Biodiversity Change, Museum Koenig Bonn, Bonn, Germany.
Carla AlegriaCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Tyler AliotoCentro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.
Paulo C AlvesCIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal.
Isabel R AmorimUniversity of the Azores, cE3c-Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE-Global Change and Sustainability Institute, Rua Capitão João d´Ávila, Pico da Urze, Angra do Heroísmo, Portugal.
Jean-Marc AuryGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Niclas BackstromEvolutionary Biology Program, Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden.
Petr BaldrianInstitute of Microbiology of the Czech Academy of Sciences, Praha, Czech Republic.
Laima BaltrunaiteNature Research Centre, Debrecen, Hungary.
Endre BartaInstitute of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary.
Bertrand BedHomInstitut de Systematique, Evolution, Biodiversite, Museum National d Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France.
Caroline BelserGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Johannes BergstenDepartment of Zoology, Swedish Museum of Natural History, Stockholm, Sweden.
Laurie BertrandGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
Helena BilandijaRuder Boskovic Institute, Zagreb, Croatia.
Mahesh Binzer-PanchalSciLifeLab, Solna, Sweden.
Iliana BistaSenckenberg Research Institute, Frankfurt, Germany.
Mark BlaxterTree of Life, Wellcome Sanger Institute, Hinxton, Cambridge, UK.
Paulo A V BorgesUniversity of the Azores, cE3c-Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE-Global Change and Sustainability Institute, Rua Capitão João d´Ávila, Pico da Urze, Angra do Heroísmo, Portugal.
Guilherme Borges DiasSciLifeLab, Solna, Sweden.
Mirte BosseVU University Amsterdam, Amsterdam, The Netherlands.
Tom BrownLeibniz Institut für Zoo und Wildtierforschung, Berlin, Germany.
Rémy BruggmannInterfaculty Bioinformatics Unit and Swiss Institute of Bioinformatics, University of Bern, Bern, Switzerland.
Elena Buena-AtienzaInstitute of Medical Genetics and Applied Genomics, University of Tubingen, Tubingen, Germany.
Josephine BurginEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Elena BuzanUniversity of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Koper, Slovenia.
Alessia CarianiDepartment of Biological, Geological and Environmental Sciences, Alma Mater Studiorum Universitá di Bologna, Bologna, Italy.
Nicolas CasadeiInstitute of Medical Genetics and Applied Genomics, University of Tubingen, Tubingen, Germany.
Matteo ChiaraDepartment of Biosciences, Università degli Studi di Milano, Milan, Italy.
Sergio ChozasCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Fedor ČiamporDepartment of Biodiversity and Ecology, Plant Science and Biodiversity Centre Slovak Academy of Sciences, Bratislava, Slovakia.
Angelica CrottiniCIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal.
Corinne CruaudGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
Fernando CruzCentro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.
Love DalenDepartment of Zoology, Stockholm University, Stockholm, Sweden.
Alessio De BiaseDepartment of Biology and Biotechnologies, Sapienza University of Rome, Rome, Italy.
Javier Del CampoInstitute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Teo DelicUniversity of Ljubljana, Biotechnical Faculty, Department of Biology, Ljubljana, Slovenia.
Alice B DennisUniversity of Namur, Department of Biology, URBE, ILEE, Namur, Belgium.
Martijn F L DerksAnimal Breeding & Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Maria Angela DiromaDepartment of Biology, University of Florence, Sesto Fiorentino, Italy.
Mihajla DjanDepartment of Biology and Ecology, University of Novi Sad, Novi Sad, Serbia.
Simone DupratGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Klara EleftheriadiInstitute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Philine G D FeulnerEawag Swiss Federal Institute of Aquatic Science and Technology, Department of Fish Ecology & Evolution, Kastanienbaum, Switzerland.
Jean-François FlotDepartment of Organismal Biology, Universite libre de Bruxelles, Brussels, Belgium.
Giobbe ForniDepartment of Biological, Geological and Environmental Sciences, Alma Mater Studiorum Universitá di Bologna, Bologna, Italy.
Bruno FossoDepartment of Biosciences, Biotechnology and Environment, University of Bari Aldo Moro, Bari, Italy.
Pascal FournierGroupe de Recherche et d Etude pour la Gestion de l Environnement, Villandraut, France.
Christine Fournier-ChambrillonGroupe de Recherche et d Etude pour la Gestion de l Environnement, Villandraut, France.
Toni GabaldonBarcelona Supercomputing Centre (BSC), Barcelona, Spain.
Shilpa GargNNF Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark.
Carmela GissiInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche, Bari, Italy.
Luca GiupponiCentre of Applied Studies for the Sustainable Management and Protection of Mountain Areas CRC Ge.S.Di.Mont., University of Milan, Milan, Italy.
Jessica Gomez-GarridoCentro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.
Josefa GonzálezInstitute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Miguel L GriloMarine and Environmental Sciences Centre, Aquatic Research Network, Instituto Universitário de Ciências Psicológicas, Sociais e da Vida, Lisboa, Portugal.
Björn GrüningBioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany.
Thomas GuerinGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Nadege GuiglielmoniUniversity of Cologne, Cologne, Germany.
Marta GutCentro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.
Marcel P HaeslerAquatic Ecology & Evolution, Institute of Ecology & Evolution, University of Bern, Bern, Switzerland.
Christoph HahnDepartment of Biology, University of Graz, Graz, Austria.
Balint HalpernMME BirdLife Hungary, Budapest, Hungary.
Peter W HarrisonEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Julia HeintzSciLifeLab, Solna, Sweden.
Maris HindriksonDepartment of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.
Jacob HöglundInstitute of Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland.
Kerstin HoweTree of Life, Wellcome Sanger Institute, Hinxton, Cambridge, UK.
Graham M HughesSchool of Biology and Environmental Science, University College Dublin, Belfield, Ireland.
Benjamin IstaceGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Mark J CockAlgal Genetics Group, UMR 8227, CNRS, Sorbonne Universite, UPMC University Paris 06, Paris, France.
Franc JanžekovičUniversity of Maribor, Faculty of Natural Sciences and Mathematics, Maribor, Slovenia.
Zophonias O JonssonInstitute of Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland.
Sagane Joye-DindDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
Janne J KoskimäkiEcology and Genetics Research Unit, University of Oulu, Oulu, Finland.
Boris KrystufekSlovenian Museum of Natural History, Ljubljana, Slovenia.
Justyna KubackaMuseum and Institute of Zoology, Polish Academy of Sciences, Warsaw, Poland.
Heiner KuhlDepartment IV Fish Biology, Fisheries and Aquaculture, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany.
Szilvia KuszaUniversity of Debrecen, Centre for Agricultural Genomics and Biotechnology, Debrecen, Hungary.
Karine LabadieGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
Meri LähteenaroDepartment of Zoology, Swedish Museum of Natural History, Stockholm, Sweden.
Henrik LantzSciLifeLab, Solna, Sweden.
Anton LavrinienkoLaboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zurich, Zurich, Switzerland.
Lucas LeclèreSorbonne Université, CNRS, Biologie Intégrative des Organismes Marins (BIOM), Banyuls-sur-Mer, France.
Ricardo Jorge LopesCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Ole MadsenAnimal Breeding & Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Ghislaine MagdelenatGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
Giulia MagogaDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Tereza ManousakiHellenic Centre for Marine Research (HCMR), Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Heraklion, Crete, Greece.
Tapio MappesDepartment of Biological and Environmental Science, University of Jyvaskyla, Jyvaskyla, Finland.
Joao Pedro MarquesCIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal.
Gemma I Martinez RedondoInstitute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Florian MaumusUniversite Paris Saclay, INRAE, URGI, Versailles, France.
Shane A McCarthyDepartment of Genetics, University of Cambridge, Cambridge, UK.
Hendrik-Jan MegensAnimal Breeding & Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Jose Melo-FerreiraCIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal.
Sofia L MendesCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Matteo MontagnaDepartment of Agricultural Sciences, University of Naples Federico II, Portici, Italy.
Joao MorenoCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Mai-Britt MosbechSciLifeLab, Solna, Sweden.
Mónica MouraCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Pólo dos Açores; Faculdade de Ciências e Tecnologia, Universidade dos Açores, Ponta Delgada, Portugal.
Zuzana MusilovaDepartment of Zoology, Faculty of Science, Charles University, Prague, Czech Republic.
Eugene MyersMax Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
Will J NashThe Earlham Institute, Norwich Research Park, Norwich, UK.
Alexander NaterInterfaculty Bioinformatics Unit and Swiss Institute of Bioinformatics, University of Bern, Bern, Switzerland.
Pamela NicholsonNext Generation Sequencing Platform, University of Bern, Bern, Switzerland.
Manuel NiellAndorra Research and Innovation, Sant Julià de Lòria, Andorra.
Reindert NijlandMarine Animal Ecology Group, Wageningen University and Research, Wageningen, The Netherlands.
Benjamin NoelUniversity of the Azores, cE3c-Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity Group, CHANGE-Global Change and Sustainability Institute, Rua Capitão João d´Ávila, Pico da Urze, Angra do Heroísmo, Portugal.
Karin NorenDepartment of Zoology, Stockholm University, Stockholm, Sweden.
Pedro H OliveiraGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Remi-Andre OlsenScience for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden.
Lino OmettoDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Rebekah A OomenCentre for Ecological and Evolutionary Synthesis, University of Oslo, Oslo, Norway.
Stephan OssowskiInstitute for Medical Genetics and Applied Genomics, University of Tubingen, Tubingen, Germany.
Vaidas PalinauskasNature Research Centre, Vilnius, Lithuania.
Snaebjorn PalssonInstitute of Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland.
Jerome P PanibeBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Joana PauperioEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Martina PavlekRuder Boskovic Institute, Zagreb, Croatia.
Emilie PayenGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
Julia PawlowskaFaculty of Biology, University of Warsaw, Warsaw, Poland.
Jaume PellicerInstitut Botànic de Barcelona, IBB (CSIC-CMCNB), Passeig del Migdia s.n., Parc de Montjüic, Barcelona, Spain.
Graziano PesoleUniversity of Bari Aldo Moro, Department of Biosciences, Biotechnology and Environment; Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche, Bari, Italy.
Joao PimentaCIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal.
Martin PippelSciLifeLab, Solna, Sweden.
Anna Maria PirttiläEcology and Genetics Research Unit, University of Oulu, Oulu, Finland.
Nikos PoulakakisDepartment of Biology, School of Sciences and Engineering, University of Crete, Voutes University Campus, Irakleio, Greece.
Jeena RajanEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Rúben M C RegoCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Pólo dos Açores; Faculdade de Ciências e Tecnologia, Universidade dos Açores, Ponta Delgada, Portugal.
Roberto ResendesUniversidade dos Acores, Departamento de Biologia, Ponta Delgada, Portugal.
Philipp ReslDepartment of Biology, University of Graz, Graz, Austria.
Ana RiesgoDepartment of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales, Madrid, Spain.
Patrik Rodin-MorchDepartment of Ecology and Genetics, Uppsala University, Uppsala, Sweden.
Andre E R SoaresSciLifeLab, Solna, Sweden.
Carlos Rodriguez FernandesCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Maria M RomeirasCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Guilherme RoxoCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Pólo dos Açores; Faculdade de Ciências e Tecnologia, Universidade dos Açores, Ponta Delgada, Portugal.
Lukas RüberAquatic Ecology & Evolution, Institute of Ecology & Evolution, University of Bern, Bern, Switzerland.
Maria Jose Ruiz-LopezDepartamento de Biología de la Conservación y Cambio Global, Estación Biológica de Doñana (EBD), CSIC, Sevilla, Spain.
Urmas SaarmaDepartment of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia.
Luis P da SilvaCIBIO, Centro de Investigacao em Biodiversidade e Recursos Geneticos, InBIO Laboratorio Associado, Universidade do Porto, Vairao, Portugal.
Manuela Sim-SimCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Lucile SolerSciLifeLab, Solna, Sweden.
Vitor C SousaCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Carla Sousa SantosMARE Marine and Environmental Sciences Centre, ARNET Aquatic Research Network, Lisboa, Portugal.
Alberto SpadaDepartment of Agricultural and Environmental Sciences Production, Landscape, Agroenergy, University of Milan, Milan, Italy.
Milomir StefanovicDepartment of Biology and Ecology, University of Novi Sad, Novi Sad, Serbia.
Viktor StegerDepartment of Genetics and Genomics, Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences, Godollo, Hungary.
Josefin StillerSection for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Matthias StöckDepartment IV Fish Biology, Fisheries and Aquaculture, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany.
Torsten H StruckNatural History Museum, University of Oslo, Blindern, Oslo, Norway.
Hiranya SudasingheNaturhistorisches Museum Bern, Bern, Switzerland.
Riikka TapanainenUniversity of Eastern Finland, Kuopio, Finland.
Christian Tellgren-RothSciLifeLab, Solna, Sweden.
Helena TrindadeCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Yevhen TukalenkoInstitute for Nuclear Research of the NAS of Ukraine, Kyiv, Ukraine.
Ilenia UrsoInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche, Bari, Italy.
Benoit VacherieGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
Steven M Van BelleghemEcology, Evolution and Conservation Biology, Department of Biology, KU Leuven, Leuven, Belgium.
Kees Van OersDepartment of Animal Ecology, Netherlands Institute of Ecology, Wageningen, The Netherlands.
Carlos Vargas-ChavezInstitute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Nevena VelickovicDepartment of Biology and Ecology, University of Novi Sad, Novi Sad, Serbia.
Noel VellaConservation Biology Research Group, Department of Biology, University of Malta, Msida, Malta.
Adriana VellaConservation Biology Research Group, Department of Biology, University of Malta, Msida, Malta.
Cristiano VernesiForest Ecology Unit, Research and Innovation Centre-Fondazione Edmund Mach, San Michele All'Adige, Italy.
Sara VicenteCE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal.
Sara VillaInstitute for Sustainable Plant Protection, National Research Council, Sesto Fiorentino, Italy.
Olga Vinnere PetterssonSciLifeLab, Solna, Sweden.
Filip A M VolckaertLaboratory of Biodiversity and Evolutionary Genomics, KU Leuven, Leuven, Belgium.
Judit VorosDepartment of Zoology, Hungarian Natural History Museum, Budapest, Hungary.
Patrick WinckerGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Sylke WinklerDepartment of Zoology, Faculty of Science, Charles University, Prague, Czech Republic.
Claudio CiofiDepartment of Biology, University of Florence, Sesto Fiorentino, Italy.
Robert M WaterhouseDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
Camila J MazzoniLeibniz Institut für Zoo und Wildtierforschung, Berlin, Germany.
Funding
Austrian Science Fund FWF P 32691Wellcome Trust
Abstract
A genomic database of all Earth's eukaryotic species could contribute to many scientific discoveries; however, only a tiny fraction of species have genomic information available. In 2018, scientists across the world united under the Earth BioGenome Project (EBP), aiming to produce a database of high-quality reference genomes containing all ~1.5 million recognized eukaryotic species. As the European node of the EBP, the European Reference Genome Atlas (ERGA) sought to implement a new decentralised, equitable and inclusive model for producing reference genomes. For this, ERGA launched a Pilot Project establishing the first distributed reference genome production infrastructure and testing it on 98 eukaryotic species from 33 European countries. Here we outline the infrastructure and explore its effectiveness for scaling high-quality reference genome production, whilst considering equity and inclusion. The outcomes and lessons learned provide a solid foundation for ERGA while offering key learnings to other transnational, national genomic resource projects and the EBP.
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