Evidence map›Paper›PMID 39289379›Full record

ArticleNature communications2024

Scalable crystal structure relaxation using an iteration-free deep generative model with uncertainty quantification.

Ziduo Yang, Yi-Ming Zhao, Xian Wang, Xiaoqing Liu, Xiuying Zhang, Yifan Li, Qiujie Lv, Calvin Yu-Chian Chen, Lei Shen

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. A Generative Framework for Predicting Antiferromagnets.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ziduo Yang *Department of Mechanical Engineering, National University of Singapore, Singapore, Singapore.
Yi-Ming Zhao *Department of Mechanical Engineering, National University of Singapore, Singapore, Singapore.ORCID http://orcid.org/0000-0002-3921-1900
Xian WangDepartment of Physics, National University of Singapore, Singapore, Singapore.
Xiaoqing LiuDepartment of Mechanical Engineering, National University of Singapore, Singapore, Singapore.
Xiuying ZhangDepartment of Mechanical Engineering, National University of Singapore, Singapore, Singapore.
Yifan LiDepartment of Mechanical Engineering, National University of Singapore, Singapore, Singapore.
Qiujie LvDepartment of Mechanical Engineering, National University of Singapore, Singapore, Singapore.
Calvin Yu-Chian ChenAI for Science (AI4S)-Preferred Program, School of Electronic and Computer Engineering, Peking University Shenzhen Graduate School, Shenzhen, China. cy@pku.edu.cn.ORCID http://orcid.org/0000-0001-9213-9832
Lei ShenDepartment of Mechanical Engineering, National University of Singapore, Singapore, Singapore. shenlei@nus.edu.sg.ORCID http://orcid.org/0000-0001-6198-5753

Funding

Ministry of Education - Singapore (MOE) A-8001194-00-00Ministry of Education - Singapore (MOE) A-8001872-00-00
6 · The paper itself

Abstract

In computational molecular and materials science, determining equilibrium structures is the crucial first step for accurate subsequent property calculations. However, the recent discovery of millions of new crystals and super large twisted structures has challenged traditional computational methods, both ab initio and machine-learning-based, due to their computationally intensive iterative processes. To address these scalability issues, here we introduce DeepRelax, a deep generative model capable of performing geometric crystal structure relaxation rapidly and without iterations. DeepRelax learns the equilibrium structural distribution, enabling it to predict relaxed structures directly from their unrelaxed ones. The ability to perform structural relaxation at the millisecond level per structure, combined with the scalability of parallel processing, makes DeepRelax particularly useful for large-scale virtual screening. We demonstrate DeepRelax's reliability and robustness by applying it to five diverse databases, including oxides, Materials Project, two-dimensional materials, van der Waals crystals, and crystals with point defects. DeepRelax consistently shows high accuracy and efficiency, validated by density functional theory calculations. Finally, we enhance its trustworthiness by integrating uncertainty quantification. This work significantly accelerates computational workflows, offering a robust and trustworthy machine-learning method for material discovery and advancing the application of AI for science.

Identifiers

PMID39289379
PMCPMC11408520

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.