Evidence map›Paper›PMID 39288995›Full record

ArticleGenome research2024

Chromosome-level subgenome-aware de novo assembly provides insight into

Cory Gardner, Junhao Chen, Christina Hadfield, Zhaolian Lu, David Debruin, Yu Zhan, Maureen J Donlin, Tae-Hyuk Ahn, Zhenguo Lin

Abstract read
In one paragraph

Article in Genome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Cory Gardner *Department of Computer Science, Saint Louis University, St. Louis, Missouri 63103, USA.
Junhao Chen *Department of Biology, Saint Louis University, Saint Louis University, St. Louis, Missouri 63103, USA.
Christina HadfieldProgram in Bioinformatics and Computational Biology, Saint Louis University, St. Louis, Missouri 63103, USA.
Zhaolian LuDepartment of Biology, Saint Louis University, Saint Louis University, St. Louis, Missouri 63103, USA.
David DebruinProgram in Bioinformatics and Computational Biology, Saint Louis University, St. Louis, Missouri 63103, USA.
Yu ZhanDepartment of Biology, Saint Louis University, Saint Louis University, St. Louis, Missouri 63103, USA.
Maureen J DonlinProgram in Bioinformatics and Computational Biology, Saint Louis University, St. Louis, Missouri 63103, USA.
Tae-Hyuk AhnDepartment of Computer Science, Saint Louis University, St. Louis, Missouri 63103, USA; zhenguo.lin@slu.edu taehyuk.ahn@slu.edu.ORCID 0000-0002-7281-9459
Zhenguo LinProgram in Bioinformatics and Computational Biology, Saint Louis University, St. Louis, Missouri 63103, USA; zhenguo.lin@slu.edu taehyuk.ahn@slu.edu.ORCID 0000-0002-8400-9138

Funding

ROLE OF CELL WALL INTEGRITY IN ECHINOCANDIN RESISTANCE IN C. NEOFORMANSR01AI123407 · NIAID · WASHINGTON UNIVERSITY · PI DONLIN, MAUREEN J, LODGE, JENNIFER K. · 2017 to 2021
$1.9M
NIAID NIH HHS R01 AI123407
6 · The paper itself

Abstract

Interspecies hybridization is prevalent in various eukaryotic lineages and plays important roles in phenotypic diversification, adaptation, and speciation. To better understand the changes that occurred in the different subgenomes of a hybrid species and how they facilitate adaptation, we have completed chromosome-level de novo assemblies of all chromosomes for a recently formed hybrid yeast,

Indexed as

Chromosomes, FungalGenome, FungalHybridization, GeneticSaccharomycesEvolution, MolecularLoss of HeterozygosityRecombination, Genetic

Identifiers

PMID39288995
PMCPMC11610598

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.