Evidence map›Paper›PMID 39288232›Full record

ArticleBriefings in bioinformatics2024

PELMI: Realize robust DNA image storage under general errors via parity encoding and local mean iteration.

Ben Cao, Kun Wang, Lei Xie, Jianxia Zhang, Yunzhu Zhao, Bin Wang, Pan Zheng

Abstract read
In one paragraph

Article in Briefings in bioinformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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  7. INNSE: Invertible neural network-based DNA image storage with self-correction encoding.Computational and structural biotechnology journal · 2025
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ben CaoSchool of Computer Science and Technology, Dalian University of Technology, No. 2 Linggong Road, Ganjingzi District, Dalian, Liaoning 116024, China.ORCID 0000-0003-1503-6009
Kun WangThe Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, No. 10 Xuefu Street, Dalian Economic-Technological Development Zone, Dalian, Liaoning 116622, China.
Lei XieThe Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, No. 10 Xuefu Street, Dalian Economic-Technological Development Zone, Dalian, Liaoning 116622, China.
Jianxia ZhangSchool of Intelligent Engineering, Henan Institute of Technology, No. 90, East Hualan Avenue, Hongqi District, Xinxiang, Henan 451191, China.
Yunzhu ZhaoThe Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, No. 10 Xuefu Street, Dalian Economic-Technological Development Zone, Dalian, Liaoning 116622, China.
Bin WangThe Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, No. 10 Xuefu Street, Dalian Economic-Technological Development Zone, Dalian, Liaoning 116622, China.
Pan ZhengDepartment of Accounting and Information Systems, University of Canterbury, Upper Riccarton, Christchurch 8140, New Zealand.

Funding

111 Project D23006Dalian 2023JJ11CG002Dalian Outstanding Young Science and Technology Talent Support Program 2022RJ08National Natural Science Foundation of China 62272079Natural Science Foundation of Liaoning Province 2022-KF-12-14Postgraduate Education Reform Project of Liaoning Province LNYJG2022493
6 · The paper itself

Abstract

DNA molecules as storage media are characterized by high encoding density and low energy consumption, making DNA storage a highly promising storage method. However, DNA storage has shortcomings, especially when storing multimedia data, wherein image reconstruction fails when address errors occur, resulting in complete data loss. Therefore, we propose a parity encoding and local mean iteration (PELMI) scheme to achieve robust DNA storage of images. The proposed parity encoding scheme satisfies the common biochemical constraints of DNA sequences and the undesired motif content. It addresses varying pixel weights at different positions for binary data, thus optimizing the utilization of Reed-Solomon error correction. Then, through lost and erroneous sequences, data supplementation and local mean iteration are employed to enhance the robustness. The encoding results show that the undesired motif content is reduced by 23%-50% compared with the representative schemes, which improves the sequence stability. PELMI achieves image reconstruction under general errors (insertion, deletion, substitution) and enhances the DNA sequences quality. Especially under 1% error, compared with other advanced encoding schemes, the peak signal-to-noise ratio and the multiscale structure similarity address metric were increased by 10%-13% and 46.8%-122%, respectively, and the mean squared error decreased by 113%-127%. This demonstrates that the reconstructed images had better clarity, fidelity, and similarity in structure, texture, and detail. In summary, PELMI ensures robustness and stability of image storage in DNA and achieves relatively high-quality image reconstruction under general errors.

Indexed as

AlgorithmsDNAImage Processing, Computer-AssistedInformation Storage and RetrievalDNADNA encodingDNA storagelocal mean iterationparity encoding

Identifiers

PMID39288232
PMCPMC11407442

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.