Evidence map›Paper›PMID 39288109›Full record

ArticlePloS one2024

Identification of critical amino acids in the DNA binding domain of LuxO: Lessons from a constitutive active LuxO.

Shradha Surin, Richa Singh, Manpreet Kaur, Gourab Basu Choudhury, Himanshu Sen, Chetna Dureja, Saumen Datta, Saumya Raychaudhuri

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shradha SurinCSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.
Richa SinghCSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.
Manpreet KaurCSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.
Gourab Basu ChoudhuryAcademy of Scientific and Innovative Research (AcSIR), Ghaziabad, India.ORCID 0000-0003-4574-8867
Himanshu SenCSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.ORCID 0000-0003-0870-9754
Chetna DurejaCSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.
Saumen DattaAcademy of Scientific and Innovative Research (AcSIR), Ghaziabad, India.
Saumya RaychaudhuriCSIR-Institute of Microbial Technology, Sector 39A, Chandigarh, India.ORCID 0000-0002-9051-5467

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quorum sensing plays a vital role in the environmental and host life cycles of Vibrio cholerae. The quorum-sensing circuit involves the consorted action of autoinducers, small RNAs, and regulatory proteins to control a plethora of physiological events in this bacterium. Among the regulatory proteins, LuxO is considered a low-cell-density master regulator. It is a homolog of NtrC, a two-component response regulator. NtrC belongs to an evolving protein family that works with the alternative sigma factor σ54 to trigger gene transcription. Structurally, these proteins comprise 3 domains: a receiver domain, a central AAA+ATPase domain, and a C-terminal DNA-binding domain (DBD). LuxO communicates with its cognate promoters by employing its DNA binding domain. In the present study, we desired to identify the critical residues in the DBD of LuxO. Our combined mutagenesis and biochemical assays resulted in the identification of eleven residues that contribute significantly to LuxO regulatory function.

Indexed as

Bacterial ProteinsVibrio choleraeAmino AcidsAmino Acid SequenceDNA, BacterialDNA-Binding ProteinsGene Expression Regulation, BacterialPromoter Regions, GeneticProtein BindingProtein DomainsQuorum SensingTranscription FactorsAmino AcidsBacterial ProteinsDNA, BacterialDNA-Binding ProteinsTranscription Factors

Identifiers

PMID39288109
PMCPMC11407668

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.