Evidence map›Paper›PMID 39287442›Full record

ArticlemBio2024

Deciphering transcript architectural complexity in bacteria and archaea.

John S A Mattick, Robin E Bromley, Kaylee J Watson, Ricky S Adkins, Christopher I Holt, Jarrett F Lebov, Benjamin C Sparklin, Tyonna S Tyson, David A Rasko, Julie C Dunning Hotopp

Abstract read
In one paragraph

Article in mBio, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

John S A Mattick *Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0002-8743-1158
Robin E Bromley *Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0003-2738-2603
Kaylee J Watson *Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.ORCID 0009-0008-2288-5723
Ricky S Adkins *Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Christopher I HoltInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0002-0326-2052
Jarrett F LebovInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Benjamin C SparklinInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0002-5547-185X
Tyonna S TysonInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
David A RaskoInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0002-7337-7154
Julie C Dunning HotoppInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.ORCID 0000-0003-3862-986X

Funding

Technology CoreU19AI110820 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI RASKO, DAVID A · 2014 to 2023
$36.5M
Systems-Level Research in Microbial PathogenesisT32AI162579 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI NICHOLAS H CARBONETTI, Julie Dunning Hotopp · 2022 to 2026
$1.7M
American Cancer Society (ACS) IRG-18-160-16-IRGNational Science Foundation (NSF) EF 2025384NIAID NIH HHS T32 AI162579NIAID NIH HHS U19 AI110820
6 · The paper itself

Abstract

RNA transcripts are potential therapeutic targets, yet bacterial transcripts have uncharacterized biodiversity. We developed an algorithm for transcript prediction called tp.py using it to predict transcripts (mRNA and other RNAs) in

Indexed as

RNA, MessengerAlgorithmsArchaeaBacteriaComputational BiologyEscherichia coli K12Haloferax volcaniiListeria monocytogenesPseudomonas aeruginosaRNA, ArchaealRNA, BacterialSequence Analysis, RNARNA, ArchaealRNA, BacterialRNA, Messengerarchaeal transcriptsbacterial transcriptsdirect RNA sequencingnon-coding RNA (ncRNA)small RNAstranscriptomics

Identifiers

PMID39287442
PMCPMC11481537

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.