Evidence map›Paper›PMID 39285490›Full record

ArticleHuman genomics2024

Whole-exome sequencing to identify causative variants in juvenile sudden cardiac death.

Martina Modena, Alberto Giannoni, Alberto Aimo, Paolo Aretini, Nicoletta Botto, Simona Vittorini, Andrea Scatena, Diana Bonuccelli, Marco Di Paolo, Michele Emdin

Abstract read
In one paragraph

Article in Human genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Martina ModenaInterdisciplinary Center for Health Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà 33, 56127, Pisa, Italy.ORCID 0000-0003-0555-542X
Alberto GiannoniInterdisciplinary Center for Health Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà 33, 56127, Pisa, Italy. a.giannoni@santannapisa.it.ORCID 0000-0001-9314-2005
Alberto AimoInterdisciplinary Center for Health Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà 33, 56127, Pisa, Italy.ORCID 0000-0001-9129-9519
Paolo AretiniFondazione Pisana per la Scienza, Via Ferruccio Giovannini 13, 56017, Pisa, Italy.ORCID 0000-0003-1075-4319
Nicoletta BottoCardiology and Cardiovascular Medicine Division, Fondazione Toscana Gabriele Monasterio, CNR - Regione Toscana, Via Giuseppe Moruzzi 1, 56124, Pisa, Italy.
Simona VittoriniCardiology and Cardiovascular Medicine Division, Fondazione Toscana Gabriele Monasterio, CNR - Regione Toscana, Via Giuseppe Moruzzi 1, 56124, Pisa, Italy.
Andrea ScatenaFondazione Pisana per la Scienza, Via Ferruccio Giovannini 13, 56017, Pisa, Italy.
Diana BonuccelliForensic Medicine Division, ASL Toscana Nord-Ovest, Lucca, Italy.
Marco Di Paolo *Department of Surgical Pathology, Medical, Molecular and Critical Area, Institute of Legal Medicine, University of Pisa, Pisa, Italy.
Michele Emdin *Interdisciplinary Center for Health Sciences, Scuola Superiore Sant'Anna, Piazza Martiri della Libertà 33, 56127, Pisa, Italy.ORCID 0000-0002-8541-1962

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundJuvenile sudden cardiac death (SCD) remains unexplained in approximately 40% of cases, leading to a significant emotional burden for the victims' families and society. Comprehensive investigations are essential to uncover its elusive causes and enable cascade family screening. This study aimed to enhance the identification of likely causative variants in juvenile SCD cases (age ≤ 50 years), particularly when autopsy findings are inconclusive.

resultsAutopsy revealed diagnostic structural abnormalities in 46%, non-diagnostic findings in 23%, and structurally normal hearts in 31% of cases. Whole-exome sequencing (WES), refined through a customized virtual gene panel was used to identify variants. These variants were then evaluated using a multidisciplinary approach and a structured variant prioritization scheme. Our extended approach identified likely causative variants in 69% of cases, outperforming the diagnostic yields of both the cardio panel and standard susceptibility gene analysis (50% and 16%, respectively). The extended cardio panel achieved an 80% diagnostic yield in cases with structurally normal hearts, demonstrating its efficacy in challenging scenarios. Notably, half of the positive cases harboured a single variant, while the remainder had two or more variants.

conclusionThis study highlights the efficacy of a multidisciplinary approach employing WES and a tailored virtual gene panel to elucidate the aetiology of juvenile SCD. The findings support the expansion of genetic testing using tailored gene panels and prioritization schemes as part of routine autopsy evaluations to improve the identification of causative variants and potentially facilitate early diagnosis in first-degree relatives.

Indexed as

Death, Sudden, CardiacExome SequencingGenetic Predisposition to DiseaseGenetic TestingAdolescentAdultAutopsyChildChild, PreschoolExomeFemaleHumansInfantMaleMiddle AgedYoung AdultArrhythmiaCardiomyopathyGeneticMolecular autopsyNGSSudden cardiac death

Identifiers

PMID39285490
PMCPMC11407015

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.