Evidence map›Paper›PMID 39285410›Full record

ArticleMalaria journal2024

Whole-genome sequencing of major malaria vectors reveals the evolution of new insecticide resistance variants in a longitudinal study in Burkina Faso.

Mahamadi Kientega, Chris S Clarkson, Nouhoun Traoré, Tin-Yu J Hui, Samantha O'Loughlin, Abdoul-Azize Millogo, Patric Stephane Epopa, Franck A Yao, Adrien M G Belem, Jon Brenas and 3 more

Abstract read
In one paragraph

Article in Malaria journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Mahamadi KientegaInstitut de Recherche en Sciences de la Santé (IRSS), 01 BP 545, Bobo-Dioulasso 01, Burkina Faso. mkient54@gmail.com.
Chris S ClarksonVector Surveillance Programme, Genomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, Cambridge, UK.
Nouhoun TraoréInstitut de Recherche en Sciences de la Santé (IRSS), 01 BP 545, Bobo-Dioulasso 01, Burkina Faso.
Tin-Yu J HuiDepartment of Life Sciences, Imperial College London, Silwood Park, Ascot, SL5 7PY, UK.
Samantha O'LoughlinDepartment of Life Sciences, Imperial College London, Silwood Park, Ascot, SL5 7PY, UK.
Abdoul-Azize MillogoInstitut de Recherche en Sciences de la Santé (IRSS), 01 BP 545, Bobo-Dioulasso 01, Burkina Faso.
Patric Stephane EpopaInstitut de Recherche en Sciences de la Santé (IRSS), 01 BP 545, Bobo-Dioulasso 01, Burkina Faso.
Franck A YaoInstitut de Recherche en Sciences de la Santé (IRSS), 01 BP 545, Bobo-Dioulasso 01, Burkina Faso.
Adrien M G BelemUniversité Nazi Boni, 01 BP 1091, Bobo-Dioulasso, Burkina Faso.
Jon BrenasVector Surveillance Programme, Genomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, Cambridge, UK.
Alistair MilesVector Surveillance Programme, Genomic Surveillance Unit, Wellcome Sanger Institute, Hinxton, Cambridge, UK.
Austin BurtDepartment of Life Sciences, Imperial College London, Silwood Park, Ascot, SL5 7PY, UK.
Abdoulaye DiabatéInstitut de Recherche en Sciences de la Santé (IRSS), 01 BP 545, Bobo-Dioulasso 01, Burkina Faso. npiediab@gmail.com.

Funding

Genome-based diagnostics for monitoring and evaluation of insecticide resistance in Anopheles gambiaeR01AI116811 · NIAID · TMLIVERPOOL SCHOOL OF TROPICAL MEDICINE · PI Martin James Donnelly · 2016 to 2026
$4.6M
Bill and Melinda Gates Foundation INV-037164Gates Foundation INV-006610NIAID NIH HHS R01 AI116811Open Philanthropy Project 2016-161185Wellcome 220540/Z/20/A, 'Wellcome Sanger Institute Quinquennial Review 2021-2026'Wellcome Trust
6 · The paper itself

Abstract

backgroundIntensive deployment of insecticide based malaria vector control tools resulted in the rapid evolution of phenotypes resistant to these chemicals. Understanding this process at the genomic level is important for the deployment of successful vector control interventions. Therefore, longitudinal sampling followed by whole genome sequencing (WGS) is necessary to understand how these evolutionary processes evolve over time. This study investigated the change in genetic structure and the evolution of the insecticide resistance variants in natural populations of Anopheles gambiae over time and space from 2012 to 2017 in Burkina Faso.

methodsNew genomic data have been generated from An. gambiae mosquitoes collected from three villages in the western part of Burkina Faso between 2012 and 2017. The samples were whole-genome sequenced and the data used in the An. gambiae 1000 genomes (Ag1000G) project as part of the Vector Observatory. Genomic data were analysed using the analysis pipeline previously designed by the Ag1000G project.

resultsThe results showed similar and consistent nucleotide diversity and negative Tajima's D between An. gambiae sensu stricto (s.s.) and Anopheles coluzzii. Principal component analysis (PCA) and the fixation index (F POPULATIONS: Organophosphate metabolic resistance markers were also identified, at increasing frequencies, within the An. gambiae s.s. populations from 2012 to 2017, including the SNP Ace1-G280S and its associated duplication. Variants simultaneously identified in the same vector populations raise concerns about the long-term efficacy of new generation bed nets and the recently organophosphate pirimiphos-methyl indoor residual spraying in Burkina Faso.

conclusionThese findings highlighted the benefit of genomic surveillance of malaria vectors for the detection of new insecticide resistance variants, the monitoring of the existing resistance variants, and also to get insights into the evolutionary processes driving insecticide resistance.

Indexed as

AnophelesInsecticide ResistanceMosquito VectorsWhole Genome SequencingAnimalsBurkina FasoEvolution, MolecularInsecticidesLongitudinal StudiesMalariaInsecticidesAn. gambiaeGenomic surveillanceInsecticide resistanceMalaria

Identifiers

PMID39285410
PMCPMC11406867

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.