Evidence map›Paper›PMID 39285180›Full record

ArticleNature communications2024

Targeted transcriptional downregulation of MYC using epigenomic controllers demonstrates antitumor activity in hepatocellular carcinoma models.

William Senapedis, Kayleigh M Gallagher, Elmer Figueroa, Jeremiah D Farelli, Robert Lyng, J Graeme Hodgson, Charles W O'Donnell, Joseph V Newman, Madison Pacaro, Stephen K Siecinski and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Advances and clinical potential of epigenome editing.Cellular and molecular life sciences : CMLS · 2026
    Review
  3. Review
  4. Article
  5. Epigenetic editing: from concept to clinic.Nature reviews. Drug discovery · 2026
    Review
  6. Review
  7. Epigenome editing based treatment: Progresses and challenges.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

William SenapedisOmega Therapeutics, Cambridge, MA, USA. wsenapedis@omegatx.com.ORCID 0009-0004-1566-2733
Kayleigh M GallagherOmega Therapeutics, Cambridge, MA, USA.
Elmer FigueroaOmega Therapeutics, Cambridge, MA, USA.ORCID 0009-0005-0772-9632
Jeremiah D FarelliOmega Therapeutics, Cambridge, MA, USA.ORCID 0000-0003-2742-2257
Robert LyngOmega Therapeutics, Cambridge, MA, USA.
J Graeme HodgsonOmega Therapeutics, Cambridge, MA, USA.
Charles W O'DonnellOmega Therapeutics, Cambridge, MA, USA.
Joseph V NewmanOmega Therapeutics, Cambridge, MA, USA.
Madison PacaroOmega Therapeutics, Cambridge, MA, USA.ORCID 0000-0002-1443-020X
Stephen K SiecinskiOmega Therapeutics, Cambridge, MA, USA.
Justin ChenOmega Therapeutics, Cambridge, MA, USA.ORCID 0000-0002-1661-4547
Thomas G McCauleyOmega Therapeutics, Cambridge, MA, USA.ORCID 0009-0002-6261-9119

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dysregulation of master regulator c-MYC (MYC) plays a central role in hepatocellular carcinoma (HCC) and other cancers but remains an elusive target for therapeutic intervention. MYC expression is epigenetically modulated within naturally occurring DNA loop structures, Insulated Genomic Domains (IGDs). We present a therapeutic approach using an epigenomic controller (EC), a programmable epigenomic mRNA medicine, to precisely modify MYC IGD sub-elements, leading to methylation of MYC regulatory elements and durable downregulation of MYC mRNA transcription. Significant antitumor activity is observed in preclinical models of HCC treated with the MYC-targeted EC, as monotherapy or in combination with tyrosine kinase or immune checkpoint inhibitors. These findings pave the way for clinical development of MYC-targeting epigenomic controllers in HCC patients and provide a framework for programmable epigenomic mRNA therapeutics for cancer and other diseases.

Indexed as

Carcinoma, HepatocellularDNA MethylationDown-RegulationEpigenomicsGene Expression Regulation, NeoplasticLiver NeoplasmsProto-Oncogene Proteins c-mycAnimalsCell Line, TumorEpigenesis, GeneticHumansImmune Checkpoint InhibitorsMiceRNA, MessengerTranscription, GeneticXenograft Model Antitumor AssaysImmune Checkpoint InhibitorsMYC protein, humanProto-Oncogene Proteins c-mycRNA, Messenger

Identifiers

PMID39285180
PMCPMC11405918

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.