Evidence map›Paper›PMID 39284717›Full record

ArticleMicrobes and environments2024

Isolation of a Moderately Acidophilic Nitrobacter from a Nitrifying Community Supplied with Urea.

Yuta Endo, Hirotsugu Fujitani, Ayano Kaneko, Takuya Ninomiya, Chiharu Umezawa, Megumi Kuroiwa, Yuichi Suwa

Abstract read
In one paragraph

Article in Microbes and environments, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Acidotolerant soil nitrite oxidizer "ISME communications · 2026
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuta EndoDepartment of Biological Sciences, Chuo University.
Hirotsugu FujitaniDepartment of Biological Sciences, Chuo University.
Ayano KanekoDepartment of Biological Sciences, Chuo University.
Takuya NinomiyaDepartment of Biological Sciences, Chuo University.
Chiharu UmezawaDepartment of Biological Sciences, Chuo University.
Megumi KuroiwaDepartment of Biological Sciences, Chuo University.
Yuichi SuwaDepartment of Biological Sciences, Chuo University.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrite-oxidizing bacteria (NOB), which perform the second step of aerobic nitrification, play an important role in soil. In the present study, we report a novel isolate from agricultural soil affiliated with the genus Nitrobacter and its physiological characteristics. We sampled the surface soil of a vegetable field and obtained mixed culture A31 using the most probable number (MPN) method with inorganic medium containing 0.75‍ ‍mM urea (pH 5.5). The dilution-extinction procedure on culture A31 led to the isolation of a strain that was designated as Nitrobacter sp. A67. The nxrB1 gene sequence of Nitrobacter sp. A67 (302 bp) was classified into Cluster 5, and the highest sequence identity was 96.10% with Nitrobacter sp. BS5/19. The NO

Indexed as

NitrificationNitritesNitrobacterOxidation-ReductionPhylogenyRNA, Ribosomal, 16SSoil MicrobiologyUreaDNA, BacterialHydrogen-Ion ConcentrationSequence Analysis, DNADNA, BacterialNitritesRNA, Ribosomal, 16SUreaacidic pHisolationnitrite-oxidizing bacteriasoilurea

Identifiers

PMID39284717
PMCPMC11427310

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.