Evidence map›Paper›PMID 39283040›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2024

TAG-SPARK: Empowering High-Speed Volumetric Imaging With Deep Learning and Spatial Redundancy.

Yin-Tzu Hsieh, Kai-Chun Jhan, Jye-Chang Lee, Guan-Jie Huang, Chang-Ling Chung, Wun-Ci Chen, Ting-Chen Chang, Bi-Chang Chen, Ming-Kai Pan, Shun-Chi Wu and 1 more

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. TAG-SPARK: Empowering High-Speed Volumetric Imaging With Deep Learning and Spatial Redundancy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yin-Tzu HsiehGraduate Institute of Electronics Engineering, National Taiwan University, Taipei, 10617, Taiwan.ORCID 0009-0003-1403-1051
Kai-Chun JhanDepartment of Engineering and System Science, National Tsing Hua University, Hsinchu, 30013, Taiwan.
Jye-Chang LeeMolecular Imaging Center, National Taiwan University, Taipei, 10617, Taiwan.
Guan-Jie HuangDepartment of Physics, National Taiwan University, Taipei, 10617, Taiwan.
Chang-Ling ChungDepartment of Physics, National Taiwan University, Taipei, 10617, Taiwan.
Wun-Ci ChenDepartment of Engineering and System Science, National Tsing Hua University, Hsinchu, 30013, Taiwan.
Ting-Chen ChangDepartment of Physics, National Taiwan University, Taipei, 10617, Taiwan.
Bi-Chang ChenResearch Center for Applied Sciences (RCAS), Academia Sinica, Taipei, 115, Taiwan.
Ming-Kai PanMolecular Imaging Center, National Taiwan University, Taipei, 10617, Taiwan.ORCID 0000-0001-5535-2714
Shun-Chi WuDepartment of Engineering and System Science, National Tsing Hua University, Hsinchu, 30013, Taiwan.
Shi-Wei ChuMolecular Imaging Center, National Taiwan University, Taipei, 10617, Taiwan.ORCID 0000-0001-7728-4329

Funding

National Science and Technology Council 109-2326-B-002-013-MY4National Science and Technology Council 111-2628-B-002-036National Science and Technology Council 112-2112-M-002-032-MY3National Science and Technology Council 112-2628-B-002-011National Science and Technology Council 113-2119-M-002-025-MBKNational Science and Technology Council 113-2321-B-002-029National Taiwan University NTU-113L8809National Taiwan University Hospital 112-UN0024National Taiwan University Hospital 113-E0001National Taiwan University Hospital 113-UN0013
6 · The paper itself

Abstract

Two-photon high-speed fluorescence calcium imaging stands as a mainstream technique in neuroscience for capturing neural activities with high spatiotemporal resolution. However, challenges arise from the inherent tradeoff between acquisition speed and image quality, grappling with a low signal-to-noise ratio (SNR) due to limited signal photon flux. Here, a contrast-enhanced video-rate volumetric system, integrating a tunable acoustic gradient (TAG) lens-based high-speed microscopy with a TAG-SPARK denoising algorithm is demonstrated. The former facilitates high-speed dense z-sampling at sub-micrometer-scale intervals, allowing the latter to exploit the spatial redundancy of z-slices for self-supervised model training. This spatial redundancy-based approach, tailored for 4D (xyzt) dataset, not only achieves >700% SNR enhancement but also retains fast-spiking functional profiles of neuronal activities. High-speed plus high-quality images are exemplified by in vivo Purkinje cells calcium observation, revealing intriguing dendritic-to-somatic signal convolution, i.e., similar dendritic signals lead to reverse somatic responses. This tailored technique allows for capturing neuronal activities with high SNR, thus advancing the fundamental comprehension of neuronal transduction pathways within 3D neuronal architecture.

Indexed as

Deep LearningAlgorithmsAnimalsCalciumImaging, Three-DimensionalMicePurkinje CellsSignal-To-Noise RatioCalciumdeep‐learning noise reductionhigh‐speed volumetric imageneural networksPurkinje cellstwo‐photon microscopy

Identifiers

PMID39283040
PMCPMC11892496

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.