Evidence map›Paper›PMID 39283039›Full record

ArticleProtein science : a publication of the Protein Society2024

GGAssembler: Precise and economical design and synthesis of combinatorial mutation libraries.

Shlomo Yakir Hoch, Ravit Netzer, Jonathan Yaacov Weinstein, Lucas Krauss, Karen Hakeny, Sarel Jacob Fleishman

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. GGAssembler: Precise and economical design and synthesis of combinatorial mutation libraries.Protein science : a publication of the Protein Society · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shlomo Yakir HochDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0003-3991-1533
Ravit NetzerDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
Jonathan Yaacov WeinsteinDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
Lucas KraussDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
Karen HakenyDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.
Sarel Jacob FleishmanDepartment of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0003-3177-7560

Funding

Donation in memory of Sam SwitzerDr. Barry Sherman Institute for Medicinal ChemistryEuropean Research Council through a Consolidator Award (815379)Israel Science Foundation (1844)Volkswagen Foundation (94747)
6 · The paper itself

Abstract

Golden Gate assembly (GGA) can seamlessly generate full-length genes from DNA fragments. In principle, GGA could be used to design combinatorial mutation libraries for protein engineering, but creating accurate, complex, and cost-effective libraries has been challenging. We present GGAssembler, a graph-theoretical method for economical design of DNA fragments that assemble a combinatorial library that encodes any desired diversity. We used GGAssembler for one-pot in vitro assembly of camelid antibody libraries comprising >10

Indexed as

MutationDNAGene LibraryPeptide LibraryProtein EngineeringDNAPeptide Librarybiotechnologycombinatorial mutation librariesDNA library synthesisGolden Gate assembly

Identifiers

PMID39283039
PMCPMC11403590

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.