Evidence map›Paper›PMID 39282167›Full record

ArticleIndian journal of microbiology2024

NGS-Based Metagenomics Depicting Taxonomic and Functional Insights into North-Western Himalayan Hot Springs.

Shailja Rangra, Nitish Sharma, Prem Lata, Kiran Bala Sharma, Reena Kumari, Sudhir P Singh, Savitri

Abstract read
In one paragraph

Article in Indian journal of microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Metagenomics insight into Puga geothermal geyser located in Himalayan Geothermal Belt (Trans-Himalayan Plateau) Ladakh, India.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Shailja RangraDepartment of Biotechnology, Himachal Pradesh University, Shimla, Himachal Pradesh 171005 India.
Nitish SharmaCenter of Innovative and Applied Bioprocessing (DBT-CIAB), Sector 81, SAS Nagar, Mohali, Punjab 140306 India.
Prem LataDepartment of Biotechnology, Himachal Pradesh University, Shimla, Himachal Pradesh 171005 India.
Kiran Bala SharmaDepartment of Biotechnology, Himachal Pradesh University, Shimla, Himachal Pradesh 171005 India.
Reena KumariDepartment of Biotechnology, Himachal Pradesh University, Shimla, Himachal Pradesh 171005 India.
Sudhir P SinghCenter of Innovative and Applied Bioprocessing (DBT-CIAB), Sector 81, SAS Nagar, Mohali, Punjab 140306 India.
SavitriDepartment of Biotechnology, Himachal Pradesh University, Shimla, Himachal Pradesh 171005 India.ORCID 0000-0003-0061-462X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hot springs have tremendous significance due to their divulging physiochemical features. In the recent past, metagenomics has emerged as a unique methodology to explore microbiota as well as new biocatalysts possessing advantageous biochemical properties from hot springs. In the present study, metagenomics has been employed for microbial diversity exploration and identification of genes involved in various metabolic pathways among two hot springs, Manikaran and Tatapani, located in Himachal Pradesh, India. Taxonomic analysis of both metagenomes revealed the dominance of the Proteobacteria phylum. Genomic signatures of other bacterial phyla such as Chloroflexi, Actinobacteria, Bacteroidetes, Cyanobacteria, Planctomycetes, and Firmicutes were also found in significant abundance in both the metagenomes. The abundance of microorganisms belonging to genera, especially Supplementary Information: The online version contains supplementary material available at 10.1007/s12088-024-01248-z.

Indexed as

CAZymesHimalayaHot springsMetagenomicsNext-generation sequencing (NGS)Thermophiles

Identifiers

PMID39282167
PMCPMC11399500

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.