Evidence map›Paper›PMID 39280905›Full record

ArticleGastro hep advances2024

Proteomic Differences in Colonic Epithelial Cells in Ulcerative Colitis Have an Epigenetic Basis.

Scott Jelinsky, Isac Lee, Mara Monetti, Susanne Breitkopf, Flora Martz, Ramya Kongala, Jeffrey Culver, Vanessa Vo, Liang Xue, Richard Gieseck and 3 more

Abstract read
In one paragraph

Article in Gastro hep advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Scott JelinskyDepartment of Inflammation and Immunology, Pfizer, Cambridge, Massachusetts.
Isac LeeDepartment of Inflammation and Immunology, Pfizer, Cambridge, Massachusetts.
Mara MonettiInternal Medicine Research Unit, Pfizer, Cambridge, Massachusetts.
Susanne BreitkopfInternal Medicine Research Unit, Pfizer, Cambridge, Massachusetts.
Flora MartzTranslational Research Program, Benaroya Research Institute, Seattle, Washington.
Ramya KongalaTranslational Research Program, Benaroya Research Institute, Seattle, Washington.
Jeffrey CulverInternal Medicine Research Unit, Pfizer, Cambridge, Massachusetts.
Vanessa VoInternal Medicine Research Unit, Pfizer, Cambridge, Massachusetts.
Liang XueMachine Learning and Computational Sciences, Early Clinical Development, Pfizer, Cambridge, Massachusetts.
Richard GieseckDepartment of Inflammation and Immunology, Pfizer, Cambridge, Massachusetts.
Caitlyn DickinsonDepartment of Inflammation and Immunology, Pfizer, Cambridge, Massachusetts.
Marion KasaianDepartment of Inflammation and Immunology, Pfizer, Cambridge, Massachusetts.
James D LordTranslational Research Program, Benaroya Research Institute, Seattle, Washington.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and Aims: The colonic epithelium serves as both a barrier to lumenal contents and a gatekeeper of inflammatory responses. In ulcerative colitis (UC), epithelial dysfunction is a core feature, but little is known about the cellular changes that may underlie disease pathology. We therefore evaluated how the chromatin epigenetics and proteome of epithelial cells differs between health and UC. Methods: We sorted live CD326+ epithelial cells from colon biopsies of healthy control (HC) screening colonoscopy recipients and from inflamed or uninflamed colon segments of UC patients on no biologic nor immunomodulator therapy (n = 5-7 subjects per group). Cell lysates were analyzed by proteomic evaluation and nuclei were analyzed for open chromatin with assay for transposase-accessible chromatin using sequencing. Results: Proteins most highly elevated in inflamed UC biopsies relative to HC were those encoded by the HLA-DRA ( Conclusion: Numerous differences exist between the proteome and chromatin of colonic epithelial cells in UC patients and HCs, some of which correlate to suggest specific epigenetic mechanisms regulating the epithelial proteome.

Indexed as

AQP8ATAC-SeqDUOX2Proteomics

Identifiers

PMID39280905
PMCPMC11401595

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.