Evidence map›Paper›PMID 39273927›Full record

ArticlePlants (Basel, Switzerland)2024

Modeling Chickpea Productivity with Artificial Image Objects and Convolutional Neural Network.

Mikhail Bankin, Yaroslav Tyrykin, Maria Duk, Maria Samsonova, Konstantin Kozlov

Abstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mikhail BankinMathematical Biology and Bioinformatics Lab, PhysMech Institute, Peter the Great St. Petersburg Polytechnic University, 195251 St. Petersburg, Russia.ORCID 0000-0002-6240-2246
Yaroslav TyrykinMathematical Biology and Bioinformatics Lab, PhysMech Institute, Peter the Great St. Petersburg Polytechnic University, 195251 St. Petersburg, Russia.
Maria DukMathematical Biology and Bioinformatics Lab, PhysMech Institute, Peter the Great St. Petersburg Polytechnic University, 195251 St. Petersburg, Russia.
Maria SamsonovaMathematical Biology and Bioinformatics Lab, PhysMech Institute, Peter the Great St. Petersburg Polytechnic University, 195251 St. Petersburg, Russia.
Konstantin KozlovMathematical Biology and Bioinformatics Lab, PhysMech Institute, Peter the Great St. Petersburg Polytechnic University, 195251 St. Petersburg, Russia.ORCID 0000-0001-6765-236X

Funding

Russian Science Fund, Ministry of Science and Higher Education of the Russian Federation World-class Research Center program: Advanced Digital Technologies 22-46-02004,075-15-2022-311
6 · The paper itself

Abstract

The chickpea plays a significant role in global agriculture and occupies an increasing share in the human diet. The main aim of the research was to develop a model for the prediction of two chickpea productivity traits in the available dataset. Genomic data for accessions were encoded in Artificial Image Objects, and a model for the thousand-seed weight (TSW) and number of seeds per plant (SNpP) prediction was constructed using a Convolutional Neural Network, dictionary learning and sparse coding for feature extraction, and extreme gradient boosting for regression. The model was capable of predicting both traits with an acceptable accuracy of 84-85%. The most important factors for model solution were identified using the dense regression attention maps method. The SNPs important for the SNpP and TSW traits were found in 34 and 49 genes, respectively. Genomic prediction with a constructed model can help breeding programs harness genotypic and phenotypic diversity to more effectively produce varieties with a desired phenotype.

Indexed as

artificial image objectschickpeaclimatic factorsconvolutional neural networkgenomic predictionGWAS

Identifiers

PMID39273927
PMCPMC11397516

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.