Evidence map›Paper›PMID 39273338›Full record

ArticleInternational journal of molecular sciences2024

Data-Driven Modelling of Substituted Pyrimidine and Uracil-Based Derivatives Validated with Newly Synthesized and Antiproliferative Evaluated Compounds.

Selma Zukić, Amar Osmanović, Anja Harej Hrkać, Sandra Kraljević Pavelić, Selma Špirtović-Halilović, Elma Veljović, Sunčica Roca, Snežana Trifunović, Davorka Završnik, Uko Maran

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Selma ZukićInstitute of Chemistry, University of Tartu, Ravila Street 14a, 50411 Tartu, Estonia.ORCID 0009-0005-5416-0231
Amar OsmanovićUniversity of Sarajevo-Faculty of Pharmacy, Zmaja od Bosne 8, 71000 Sarajevo, Bosnia and Herzegovina.ORCID 0000-0002-4206-6177
Anja Harej HrkaćDepartment of Basic and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Rijeka, Braće Branchetta 20, 51000 Rijeka, Croatia.
Sandra Kraljević PavelićFaculty of Health Studies, University of Rijeka, Viktora Cara Emina 5, 51000 Rijeka, Croatia.
Selma Špirtović-HalilovićUniversity of Sarajevo-Faculty of Pharmacy, Zmaja od Bosne 8, 71000 Sarajevo, Bosnia and Herzegovina.
Elma VeljovićUniversity of Sarajevo-Faculty of Pharmacy, Zmaja od Bosne 8, 71000 Sarajevo, Bosnia and Herzegovina.
Sunčica RocaCentre for Nuclear Magnetic Resonance (NMR), Ruđer Bošković Institute, Bijenička Street 54, 10000 Zagreb, Croatia.ORCID 0000-0001-9562-6820
Snežana TrifunovićFaculty of Chemistry, University of Belgrade, Studentski trg 12-16, 11158 Belgrade, Serbia.ORCID 0000-0001-9528-6686
Davorka ZavršnikUniversity of Sarajevo-Faculty of Pharmacy, Zmaja od Bosne 8, 71000 Sarajevo, Bosnia and Herzegovina.
Uko MaranInstitute of Chemistry, University of Tartu, Ravila Street 14a, 50411 Tartu, Estonia.ORCID 0000-0003-2506-0934

Funding

Eesti Teadusagentuur (Estonian Research Council) MOBJD1101, PRG1509
6 · The paper itself

Abstract

The pyrimidine heterocycle plays an important role in anticancer research. In particular, the pyrimidine derivative families of uracil show promise as structural scaffolds relevant to cervical cancer. This group of chemicals lacks data-driven machine learning quantitative structure-activity relationships (QSARs) that allow for generalization and predictive capabilities in the search for new active compounds. To achieve this, a dataset of pyrimidine and uracil compounds from ChEMBL were collected and curated. A workflow was developed for data-driven machine learning QSAR using an intuitive dataset design and forwards selection of molecular descriptors. The model was thoroughly externally validated against available data. Blind validation was also performed by synthesis and antiproliferative evaluation of new synthesized uracil-based and pyrimidine derivatives. The most active compound among new synthesized derivatives, 2,4,5-trisubstituted pyrimidine was predicted with the QSAR model with differences of 0.02 compared to experimentally tested activity.

Indexed as

Antineoplastic AgentsCell ProliferationPyrimidinesQuantitative Structure-Activity RelationshipUracilCell Line, TumorHumansMachine LearningAntineoplastic AgentspyrimidinePyrimidinesUracilantiproliferative activitydrug designHeLa cell linepyrimidinesQSARsynthesisuracil derivatives

Identifiers

PMID39273338
PMCPMC11395534

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.