Evidence map›Paper›PMID 39273007›Full record

ArticleCells2024

Identification and Characterization of Multiple Paneth Cell Types in the Mouse Small Intestine.

Steven Timmermans, Charlotte Wallaeys, Natalia Garcia-Gonzalez, Lotte Pollaris, Yvan Saeys, Claude Libert

Abstract read
In one paragraph

Article in Cells, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Steven TimmermansVIB Center for Inflammation Research, 9052 Ghent, Belgium.ORCID 0000-0002-5152-9620
Charlotte WallaeysVIB Center for Inflammation Research, 9052 Ghent, Belgium.
Natalia Garcia-GonzalezVIB Center for Inflammation Research, 9052 Ghent, Belgium.
Lotte PollarisVIB Center for Inflammation Research, 9052 Ghent, Belgium.ORCID 0000-0002-9509-9386
Yvan SaeysVIB Center for Inflammation Research, 9052 Ghent, Belgium.
Claude LibertVIB Center for Inflammation Research, 9052 Ghent, Belgium.ORCID 0000-0001-6408-036X

Funding

Ghent University BOF.MET.2021.0001.0Research Foundation - Flanders 1S59421NResearch Foundation - Flanders S002721N
6 · The paper itself

Abstract

The small intestinal crypts harbor secretory Paneth cells (PCs) which express bactericidal peptides that are crucial for maintaining intestinal homeostasis. Considering the diverse environmental conditions throughout the course of the small intestine, multiple subtypes of PCs are expected to exist. We applied single-cell RNA-sequencing of PCs combined with deep bulk RNA-sequencing on PC populations of different small intestinal locations and discovered several expression-based PC clusters. Some of these are discrete and resemble tuft cell-like PCs, goblet cell (GC)-like PCs, PCs expressing stem cell markers, and atypical PCs. Other clusters are less discrete but appear to be derived from different locations along the intestinal tract and have environment-dictated functions such as food digestion and antimicrobial peptide production. A comprehensive spatial analysis using Resolve Bioscience was conducted, leading to the identification of different PC's transcriptomic identities along the different compartments of the intestine, but not between PCs in the crypts themselves.

Indexed as

Intestine, SmallPaneth CellsAnimalsMiceMice, Inbred C57BLSingle-Cell AnalysisTranscriptomePaneth cellssingle-cell RNA-seqsmall intestine

Identifiers

PMID39273007
PMCPMC11394207

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.