Evidence map›Paper›PMID 39272009›Full record

ArticleBMC plant biology2024

Unveiling the role of epigenetics in leaf senescence: a comparative study to identify different epigenetic regulations of senescence types in barley leaves.

Elżbieta Rudy, Umesh Kumar Tanwar, Zofia Szlachtowska, Magda Grabsztunowicz, Magdalena Arasimowicz-Jelonek, Ewa Sobieszczuk-Nowicka

Abstract readComparative Study
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Elżbieta Rudy *Department of Plant Physiology, Faculty of Biology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 6 Str., Poznań, 61-614, Poland.
Umesh Kumar Tanwar *Department of Plant Physiology, Faculty of Biology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 6 Str., Poznań, 61-614, Poland.
Zofia SzlachtowskaDepartment of Plant Physiology, Faculty of Biology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 6 Str., Poznań, 61-614, Poland.
Magda GrabsztunowiczDepartment of Plant Physiology, Faculty of Biology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 6 Str., Poznań, 61-614, Poland.
Magdalena Arasimowicz-JelonekDepartment of Plant Ecophysiology, Faculty of Biology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 6 Str., Poznań, 61-614, Poland.
Ewa Sobieszczuk-NowickaDepartment of Plant Physiology, Faculty of Biology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 6 Str., Poznań, 61-614, Poland. evaanna@amu.edu.pl.

Funding

Narodowe Centrum Nauki 2018/30/E/NZ9/00827
6 · The paper itself

Abstract

backgroundDevelopmental leaf senescence (DLS) is an irreversible process followed by cell death. Dark-induced leaf senescence (DILS) is a reversible process that allows adaptations to changing environmental conditions. As a result of exposure to adverse environmental changes, plants have developed mechanisms that enable them to survive. One of these is the redirection of metabolism into the senescence pathway. The plant seeks to optimise resource allocation. Our research aims to demonstrate how epigenetic machinery regulates leaf senescence, including its irreversibility.

resultsIn silico analyses allowed the complex identification and characterisation of 117 genes involved in epigenetic processes in barley. These genes include those responsible for DNA methylation, post-translational histone modifications, and ATP-dependent chromatin remodelling complexes. We then performed RNAseq analysis after DILS and DLS to evaluate their expression in senescence-dependent leaf metabolism. Principal component analysis revealed that evaluated gene expression in developmental senescence was similar to controls, while induced senescence displayed a distinct profile. Western blot experiments revealed that senescence engages senescence-specific histone modification. During DILS and DLS, the methylation of histone proteins H3K4me3 and H3K9me2 increased. H3K9ac acetylation levels significantly decreased during DILS and remained unchanged during DLS.

conclusionsThe study identified different epigenetic regulations of senescence types in barley leaves. These findings are valuable for exploring epigenetic regulation of senescence-related molecular mechanisms, particularly in response to premature, induced leaf senescence. Based on the results, we suggest the presence of an epigenetically regulated molecular switch between cell survival and cell death in DILS, highlighting an epigenetically driven cell survival metabolic response.

Indexed as

Epigenesis, GeneticHordeumPlant LeavesPlant SenescenceDNA MethylationGene Expression Regulation, PlantHistonesHistonesATP-dependent chromatin remodelersBarleyDNA modifiersHistone modifiersLeaf senescence

Identifiers

PMID39272009
PMCPMC11401419

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.