Evidence map›Paper›PMID 39271986›Full record

ArticleBMC infectious diseases2024

Molecular detection of OXA-48 and NDM-1 carbapenemase genes among clinical isolates of Klebsiella pneumoniae recovered from patients attending a private tertiary hospital in Southwestern Nigeria.

Chisom Blossom Onyeji, Seyi Samson Enitan, Olalekan Ademola Kemiki, Abigail Chinyere Igwe, Akinbobola Ayokunle Adeniyi, Michael Unata Iduh, Grace Eleojo Itodo, Ayomide Oluwatobiloba Okuneye, Precious Oluwatosin Adamson, Mofeoluwa Favour Kolawole

Abstract read
In one paragraph

Article in BMC infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chisom Blossom OnyejiDepartment of Medical Laboratory Science, School of Public and Allied Health, Babcock University, Ilishan-Remo, Ogun State, Nigeria.ORCID http://orcid.org/0009-0008-0480-6649
Seyi Samson EnitanDepartment of Medical Laboratory Science, School of Public and Allied Health, Babcock University, Ilishan-Remo, Ogun State, Nigeria. enitans@babcock.edu.ng.ORCID http://orcid.org/0000-0001-5993-7920
Olalekan Ademola KemikiMolecular and Tissue Culture Laboratory, Babcock University Teaching Hospital, Ilishan-Remo, Ogun State, Nigeria.
Abigail Chinyere IgweMolecular and Tissue Culture Laboratory, Babcock University Teaching Hospital, Ilishan-Remo, Ogun State, Nigeria.ORCID http://orcid.org/0000-0002-1819-5470
Akinbobola Ayokunle AdeniyiDepartment of Medical Microbiology, University College Hospital, Ibadan, Oyo State, Nigeria.ORCID http://orcid.org/0000-0002-5966-9046
Michael Unata IduhDepartment of Medical Microbiology, School of Medical Laboratory Science, Usmanu Danfodiyo University, Sokoto, Sokoto State, Nigeria.ORCID http://orcid.org/0000-0001-6138-2573
Grace Eleojo ItodoDepartment of Microbiology, Federal Teaching Hospital, Lokoja, Kogi State, Nigeria.ORCID http://orcid.org/0000-0002-7821-1727
Ayomide Oluwatobiloba OkuneyeDepartment of Medical Laboratory Science, School of Public and Allied Health, Babcock University, Ilishan-Remo, Ogun State, Nigeria.ORCID http://orcid.org/0009-0007-4432-2350
Precious Oluwatosin AdamsonDepartment of Medical Laboratory Science, School of Public and Allied Health, Babcock University, Ilishan-Remo, Ogun State, Nigeria.ORCID http://orcid.org/0009-0001-6965-4198
Mofeoluwa Favour KolawoleDepartment of Medical Laboratory Science, School of Public and Allied Health, Babcock University, Ilishan-Remo, Ogun State, Nigeria.ORCID http://orcid.org/0009-0001-6754-8922

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There have been increasing reports of Klebsiella pneumoniae resistant to β-lactam antibiotics. This study aimed to determine the prevalence of some selected carbapenemase genes among clinical isolates of Klebsiella pneumoniae recovered from patients attending a private tertiary hospital in Southwestern Nigeria. The study was conducted over two months (February-March 2024). A total of 50 clinical isolates of Klebsiella pneumoniae from different clinical specimens were obtained from the Medical Microbiology Department, Babcock University Teaching Hospital (BUTH). The clinical isolates were then characterized using standard microbiological procedures and were tested for susceptibility to meropenem and other classes of antibiotics according to Clinical and Laboratory Standards Institute (CLSI) guidelines. Polymerase Chain Reaction (PCR) detection for OXA-48 and NDM-1 carbapenemase genes was performed on the 50 clinical isolates. PCR analysis showed that 9 (18%) clinical isolates were positive for the OXA-48 gene, 22 (44%) were positive for the NDM-1 gene, 4 (8%) possessed both the OXA-48 and NDM-1 genes, and 23 (46%) possessed neither the OXA-48 nor NDM-1 genes. Antibiotic Susceptibility Testing (AST) revealed that all the clinical isolates were resistant to meropenem. In conclusion, this study demonstrates the presence of OXA-48 and NDM-1 genes in clinical isolates of Klebsiella pneumoniae recovered from patients attending a private tertiary hospital in Southwestern Nigeria, highlighting the role of ESBL (extended-spectrum beta-lactamase) as a major resistance mechanism alongside other mechanisms. Population-based surveillance programs should be implemented to monitor the prevalence and epidemiology of Klebsiella pneumoniae infections at the community level, facilitating early detection of outbreaks and identification of emerging antimicrobial resistance patterns. CORE TIP: This study highlights the significant prevalence of NDM-1 and OXA-48 carbapenemase genes among Klebsiella pneumoniae clinical isolates in a private tertiary hospital in Southwestern Nigeria, with 44% and 18% of isolates harboring these genes, respectively. Notably, 46% of isolates were resistant to carbapenems despite lacking these genes, suggesting alternative resistance mechanisms. The findings underscore the urgent need for enhanced surveillance, infection control measures, and antibiotic stewardship programs to combat the spread of multidrug-resistant Klebsiella pneumoniae in healthcare settings.

Indexed as

Anti-Bacterial AgentsBacterial Proteinsbeta-LactamasesKlebsiella InfectionsKlebsiella pneumoniaeMicrobial Sensitivity TestsTertiary Care CentersAdultAgedFemaleHumansMaleMiddle AgedNigeriaYoung AdultAnti-Bacterial AgentsBacterial Proteinsbeta-lactamase NDM-1beta-LactamasescarbapenemaseoxacillinaseCarbapenemase genesKlebsiella pneumoniaeNDM-1OXA-48Southwestern nigeria

Identifiers

PMID39271986
PMCPMC11395985

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.