Evidence map›Paper›PMID 39271960›Full record

ArticleEMBO molecular medicine2024

Multiomics reveals microbial metabolites as key actors in intestinal fibrosis in Crohn's disease.

Xuehua Li, Shixian Hu, Xiaodi Shen, Ruonan Zhang, Caiguang Liu, Lin Xiao, Jinjiang Lin, Li Huang, Weitao He, Xinyue Wang and 13 more

Abstract read
In one paragraph

Article in EMBO molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Trial
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  12. Immunomodulation ofFoods (Basel, Switzerland) · 2025
    Article
  13. Frontiers in immunology · 2025
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Xuehua Li *Department of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.ORCID http://orcid.org/0000-0002-7476-2644
Shixian Hu *Department of Gastroenterology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Xiaodi Shen *Department of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.ORCID http://orcid.org/0000-0002-4754-8415
Ruonan Zhang *Department of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.ORCID http://orcid.org/0000-0002-2815-4584
Caiguang LiuDepartment of Gastroenterology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Lin XiaoDepartment of Gastroenterology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.ORCID http://orcid.org/0009-0009-4672-2010
Jinjiang LinDepartment of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.ORCID http://orcid.org/0009-0008-3560-0184
Li HuangDepartment of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.ORCID http://orcid.org/0009-0001-8049-229X
Weitao HeDepartment of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Xinyue WangDepartment of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Lili HuangDepartment of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Qingzhu ZhengDepartment of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Luyao WuDepartment of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Canhui SunDepartment of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Zhenpeng PengDepartment of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.ORCID http://orcid.org/0000-0002-2304-5215
Minhu ChenDepartment of Gastroenterology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Ziping LiDepartment of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Rui FengDepartment of Gastroenterology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Yijun ZhuDepartment of Gastroenterology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China.
Yangdi Wang *Department of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China. wangyd83@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-9731-2830
Zhoulei Li *Department of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China. lizhlei3@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-9426-0836
Ren Mao *Department of Gastroenterology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China. maor5@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-5523-8185
Shi-Ting Feng *Department of Radiology, The First Affiliated Hospital, Sun Yat-Sen University, 58 Zhongshan II Road, 510080, Guangzhou, People's Republic of China. fengsht@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-0869-7290

Funding

GDSTC | Basic and Applied Basic Research Foundation of Guangdong Province () 2023A1515011097GDSTC | Basic and Applied Basic Research Foundation of Guangdong Province () 2023B1515020070GDSTC | Special Project for Research and Development in Key areas of Guangdong Province () 2023B1111040003MOE | Fundamental Research Funds for the Central Universities (Fundamental Research Fund for the Central Universities) 24ykqb003MOST | National Key Research and Development Program of China (NKPs) 2023YFC2507300MOST | National Natural Science Foundation of China (NSFC) 81970483MOST | National Natural Science Foundation of China (NSFC) 82070680MOST | National Natural Science Foundation of China (NSFC) 82072002MOST | National Natural Science Foundation of China (NSFC) 82170537MOST | National Natural Science Foundation of China (NSFC) 82222010MOST | National Natural Science Foundation of China (NSFC) 82270693MOST | National Natural Science Foundation of China (NSFC) 82271958
6 · The paper itself

Abstract

Intestinal fibrosis is the primary cause of disability in patients with Crohn's disease (CD), yet effective therapeutic strategies are currently lacking. Here, we report a multiomics analysis of gut microbiota and fecal/blood metabolites of 278 CD patients and 28 healthy controls, identifying characteristic alterations in gut microbiota (e.g., Lachnospiraceae, Ruminococcaceae, Muribaculaceae, Saccharimonadales) and metabolites (e.g., L-aspartic acid, glutamine, ethylmethylacetic acid) in moderate-severe intestinal fibrosis. By integrating multiomics data with magnetic resonance enterography features, putative links between microbial metabolites and intestinal fibrosis-associated morphological alterations were established. These potential associations were mediated by specific combinations of amino acids (e.g., L-aspartic acid), primary bile acids, and glutamine. Finally, we provided causal evidence that L-aspartic acid aggravated intestinal fibrosis both in vitro and in vivo. Overall, we offer a biologically plausible explanation for the hypothesis that gut microbiota and its metabolites promote intestinal fibrosis in CD while also identifying potential targets for therapeutic trials.

Indexed as

Crohn DiseaseFibrosisGastrointestinal MicrobiomeAdultAnimalsFecesFemaleHumansIntestinesMaleMetabolomeMetabolomicsMiceMiddle AgedMultiomicsCrohn’s DiseaseFibrosisGut MicrobiotaMagnetic Resonance EnterographyMetabolites

Identifiers

PMID39271960
PMCPMC11473649

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.