Evidence map›Paper›PMID 39271954›Full record

ArticleNature chemical biology2025

Incorporation of nitrogen in antinutritional Solanum alkaloid biosynthesis.

Dagny Grzech, Samuel J Smit, Ryan M Alam, Marianna Boccia, Yoko Nakamura, Benke Hong, Ranjit Barbole, Sarah Heinicke, Maritta Kunert, Wibke Seibt and 6 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Structural innovation and flexibility in plant chemical defenses.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Structural innovation in the evolution of plant chemical defense.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Dagny GrzechDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany.ORCID 0000-0001-5575-2582
Samuel J SmitCentre for Novel Agricultural Products, Department of Biology, University of York, York, UK.ORCID 0000-0002-7382-5113
Ryan M AlamDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany.ORCID 0000-0002-0227-0771
Marianna BocciaDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany.
Yoko NakamuraDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany.
Benke HongDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany.
Ranjit BarboleDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.
Sarah HeinickeDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany.
Maritta KunertDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany.
Wibke SeibtDepartment of Molecular Ecology, Max Planck Institute for Chemical Ecology, Jena, Germany.
Veit GrabeMicroscopic Imaging Service Group, Max Planck Institute for Chemical Ecology, Jena, Germany.
Lorenzo CaputiDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany.ORCID 0000-0002-7783-6733
Benjamin R LichmanCentre for Novel Agricultural Products, Department of Biology, University of York, York, UK.ORCID 0000-0002-0033-1120
Sarah E O'ConnorDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany. oconnor@ice.mpg.de.ORCID 0000-0003-0356-6213
Asaph AharoniDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel. asaph.aharoni@weizmann.ac.il.ORCID 0000-0002-6077-1590
Prashant D SonawaneDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany. psonawane@ice.mpg.de.ORCID 0000-0002-3631-1703

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Steroidal glycoalkaloids (SGAs) are specialized metabolites produced by hundreds of Solanum species including food crops, such as tomato, potato and eggplant. Unlike true alkaloids, nitrogen is introduced at a late stage of SGA biosynthesis through an unknown transamination reaction. Here, we reveal the mechanism by which GLYCOALKALOID METABOLISM12 (GAME12) directs the biosynthesis of nitrogen-containing steroidal alkaloid aglycone in Solanum. We report that GAME12, a neofunctionalized γ-aminobutyric acid (GABA) transaminase, undergoes changes in both active site specificity and subcellular localization to switch from its renown and generic activity in core metabolism to function in a specialized metabolic pathway. Moreover, overexpression of GAME12 alone in engineered S. nigrum leaves is sufficient for de novo production of nitrogen-containing SGAs. Our results highlight how hijacking a core metabolism GABA shunt enzyme is crucial in numerous Solanum species for incorporating a nitrogen to a steroidal-specialized metabolite backbone and form defensive alkaloids.

Indexed as

AlkaloidsNitrogenSolanum4-Aminobutyrate TransaminasePlant Leaves4-Aminobutyrate TransaminaseAlkaloidsNitrogen

Identifiers

PMID39271954
PMCPMC11666457

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.