Evidence map›Paper›PMID 39271943›Full record

ArticleNature plants2024

RNA helicase Brr2a promotes miRNA biogenesis by properly remodelling secondary structure of pri-miRNAs.

Xindi Li, Songxiao Zhong, Changhao Li, Xingxing Yan, Jiaying Zhu, Yanjun Li, Zhiye Wang, Xu Peng, Xiuren Zhang

Abstract read
In one paragraph

Article in Nature plants, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Addressing the tissue specificity of U5 snRNP spliceosomopathies.Frontiers in cell and developmental biology · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Xindi Li *Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.ORCID http://orcid.org/0009-0001-7445-1416
Songxiao Zhong *Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA. zhongsx@tamu.edu.ORCID http://orcid.org/0000-0001-8426-3905
Changhao LiDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.ORCID http://orcid.org/0000-0002-4838-8708
Xingxing YanDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.
Jiaying ZhuDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.ORCID http://orcid.org/0000-0001-6952-1849
Yanjun LiState Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of MARA and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo, China.
Zhiye WangState Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China.ORCID http://orcid.org/0000-0002-2328-3117
Xu PengDepartment of Medical Physiology, College of Medicine, Texas A&M University, College Station, TX, USA.ORCID http://orcid.org/0000-0001-9068-102X
Xiuren ZhangDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA. xiuren.zhang@tamu.edu.ORCID http://orcid.org/0000-0001-8982-2999

Funding

Functions and mechanisms of new components in RNA silencing--Admin SuppR35GM151976 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI ZHANG, XIUREN · 2024 to 2025
$1.1M
Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R35GM151976NIGMS NIH HHS R35 GM151976NSF | BIO | Division of Molecular and Cellular Biosciences (MCB) 2139857Welch Foundation A-2177-20230405
6 · The paper itself

Abstract

RNA secondary structure (RSS) of primary microRNAs (pri-miRNAs) is a key determinant for miRNA production. Here we report that RNA helicase (RH) Brr2a, best known as a spliceosome component, modulates the structural complexity of pri-miRNAs to fine tune miRNA yield. Brr2a interacts with microprocessor component HYL1 and its loss reduces the levels of miRNAs derived from both intron-containing and intron-lacking pri-miRNAs. Brr2a binds to pri-miRNAs in vivo and in vitro. Furthermore, Brr2a hydrolyses ATP and the activity can be significantly enhanced by pri-miRNAs. Consequently, Brr2a unwinds pri-miRNAs in vitro. Moreover, Brr2a variants with compromised ATPase or RH activity are incapable of unwinding pri-miRNA, and their transgenic plants fail to restore miRNA levels in brr2a-2. Importantly, most of tested pri-miRNAs display distinct RSS, rendering them unsuitable for efficient processing in brr2a mutants vs Col-0. Collectively, this study reveals that Brr2a plays a non-canonical role in miRNA production beyond splicing regulation.

Indexed as

ArabidopsisArabidopsis ProteinsMicroRNAsRNA HelicasesNucleic Acid ConformationRNA, PlantArabidopsis ProteinsMicroRNAsRNA HelicasesRNA, Plant

Identifiers

PMID39271943
PMCPMC11578039

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.