Evidence map›Paper›PMID 39269824›Full record

ArticleCancer biomarkers : section A of Disease markers2024

Machine learning identifies a 5-serum cytokine panel for the early detection of chronic atrophy gastritis patients.

Fangmei An, Yan Ge, Wei Ye, Lin Ji, Ke Chen, Yunfei Wang, Xiaoxue Zhang, Shengrong Dong, Yao Shen, Jiamin Zhao and 7 more

Abstract read
In one paragraph

Article in Cancer biomarkers : section A of Disease markers, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Fangmei AnDepartment of Gastroenterology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, National Clinical Research Center for Digestive Diseases (Xi 'an) Jiangsu Branch Wuxi, Jiangsu, China.
Yan GeAliveX Biotech, Shanghai, China.
Wei YeAliveX Biotech, Shanghai, China.
Lin JiDepartment of Gastroenterology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, National Clinical Research Center for Digestive Diseases (Xi 'an) Jiangsu Branch Wuxi, Jiangsu, China.
Ke ChenDepartment of Gastroenterology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, National Clinical Research Center for Digestive Diseases (Xi 'an) Jiangsu Branch Wuxi, Jiangsu, China.
Yunfei WangDepartment of Gastroenterology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, National Clinical Research Center for Digestive Diseases (Xi 'an) Jiangsu Branch Wuxi, Jiangsu, China.
Xiaoxue ZhangDepartment of Gastroenterology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, National Clinical Research Center for Digestive Diseases (Xi 'an) Jiangsu Branch Wuxi, Jiangsu, China.
Shengrong DongDepartment of Gastroenterology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, National Clinical Research Center for Digestive Diseases (Xi 'an) Jiangsu Branch Wuxi, Jiangsu, China.
Yao ShenDepartment of Gastroenterology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, National Clinical Research Center for Digestive Diseases (Xi 'an) Jiangsu Branch Wuxi, Jiangsu, China.
Jiamin ZhaoDepartment of Gastroenterology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, National Clinical Research Center for Digestive Diseases (Xi 'an) Jiangsu Branch Wuxi, Jiangsu, China.
Xiaojuan GaoDepartment of Gastroenterology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, National Clinical Research Center for Digestive Diseases (Xi 'an) Jiangsu Branch Wuxi, Jiangsu, China.
Simon JunankarAliveX Biotech, Darlington, Australia.
Robin Barry ChanAliveX Biotech, Shanghai, China.
Dimitris ChristodoulouAliveX Biotech, Shanghai, China.
Wen WenAliveX Biotech, Shanghai, China.
Peihua LuDepartment of Medical Oncology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, Wuxi, Jiangsu, China.
Qiang ZhanDepartment of Gastroenterology, Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi People's Hospital, Wuxi Medical Center, Nanjing Medical University, National Clinical Research Center for Digestive Diseases (Xi 'an) Jiangsu Branch Wuxi, Jiangsu, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundChronic atrophy gastritis (CAG) is a high-risk pre-cancerous lesion for gastric cancer (GC). The early and accurate detection and discrimination of CAG from benign forms of gastritis (e.g. chronic superficial gastritis, CSG) is critical for optimal management of GC. However, accurate non-invasive methods for the diagnosis of CAG are currently lacking. Cytokines cause inflammation and drive cancer transformation in GC, but their utility as a diagnostic for CAG is poorly characterized.

methodsBlood samples were collected, and 40 cytokines were quantified using a multiplexed immunoassay from 247 patients undergoing screening via endoscopy. Patients were divided into discovery and validation sets. Each cytokine importance was ranked using the feature selection algorithm Boruta. The cytokines with the highest feature importance were selected for machine learning (ML), using the LightGBM algorithm.

resultsFive serum cytokines (IL-10, TNF-α, Eotaxin, IP-10 and SDF-1a) that could discriminate between CAG and CSG patients were identified and used for predictive model construction. This model was robust and could identify CAG patients with high performance (AUC = 0.88, Accuracy = 0.78). This compared favorably to the conventional approach using the PGI/PGII ratio (AUC = 0.59).

conclusionUsing state-of-the-art ML and a blood-based immunoassay, we developed an improved non-invasive screening method for the detection of precancerous GC lesions.

fundingSupported in part by grants from: Jiangsu Science and Technology Project (no. BK20211039); Top Talent Support Program for young and middle-aged people of Wuxi Health Committee (BJ2023008); Medical Key Discipline Program of Wuxi Health Commission (ZDXK2021010), Wuxi Science and Technology Bureau Project (no. N20201004); Scientific Research Program of Wuxi Health Commission (Z202208, J202104).

Indexed as

CytokinesGastritis, AtrophicMachine LearningAdultAgedChronic DiseaseEarly Detection of CancerFemaleHumansMaleMiddle AgedStomach NeoplasmsCytokinesChronic Atrophy Gastritis (CAG)Chronic Superficial Gastritis (CSG)CytokinesMachine Learning (ML) AlgorithmsScreening

Identifiers

PMID39269824
PMCPMC11495322

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.