Evidence map›Paper›PMID 39268871›Full record

ArticlePlant physiology2024

Efficient gene editing of a model fern species through gametophyte-based transformation.

Wei Jiang, Fenglin Deng, Mohammad Babla, Chen Chen, Dongmei Yang, Tao Tong, Yuan Qin, Guang Chen, Blaine Marchant, Pamela Soltis and 3 more

Abstract read
In one paragraph

Article in Plant physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Wei JiangMARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River, College of Agriculture, Yangtze University, Jingzhou 434025, China.ORCID 0000-0002-5473-0223
Fenglin DengMARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River, College of Agriculture, Yangtze University, Jingzhou 434025, China.ORCID 0000-0002-2577-9001
Mohammad BablaSchool of Science, Western Sydney University, Penrith, NSW 2751, Australia.ORCID 0009-0007-7163-0260
Chen ChenSchool of Science, Western Sydney University, Penrith, NSW 2751, Australia.
Dongmei YangSchool of Science, Western Sydney University, Penrith, NSW 2751, Australia.
Tao TongMARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River, College of Agriculture, Yangtze University, Jingzhou 434025, China.ORCID 0000-0002-9003-9667
Yuan QinMARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River, College of Agriculture, Yangtze University, Jingzhou 434025, China.
Guang ChenInstitute of Digital Agriculture, Zhejiang Academy of Agricultural Science, Hangzhou 310021, China.
Blaine MarchantDepartment of Biology, University of Missouri-St. Louis, St. Louis, MO 63121, USA.
Pamela SoltisDepartment of Biology, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0001-9310-8659
Douglas Edward SoltisDepartment of Biology, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0001-8638-4137
Fanrong ZengMARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River, College of Agriculture, Yangtze University, Jingzhou 434025, China.
Zhong-Hua ChenSchool of Science, Western Sydney University, Penrith, NSW 2751, Australia.ORCID 0000-0002-7531-320X

Funding

Australian Research Council FT210100366China Scholarship Council 202208420191CRC Future Food Systems P2-016Grain Research and Development Corporation WSU2303-001RTXHorticulture Innovation Australia LP18000Hubei Hongshan Laboratory 2021hskf004Joint Research Project from NSFC-ASRT 32061143044Major InternationalNational Natural Science Foundation of China 32272053
6 · The paper itself

Abstract

The clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated nuclease (Cas) system allows precise and easy editing of genes in many plant species. However, this system has not yet been applied to any fern species through gametophytes due to the complex characteristics of fern genomes, genetics, and physiology. Here, we established a protocol for gametophyte-based screening of single-guide RNAs (sgRNAs) with high efficiency for CRISPR/Cas9-mediated gene knockout in a model fern species, Ceratopteris richardii. We utilized the C. richardii ACTIN promoter to drive sgRNA expression and the enhanced CaMV 35S promoter to drive the expression of Streptococcus pyogenes Cas9 in this CRISPR-mediated editing system, which was employed to successfully edit a few genes, such as Nucleotidase/phosphatase 1 (CrSAL1) and Phytoene Desaturase (CrPDS), which resulted in an albino phenotype in C. richardii. Knockout of CrSAL1 resulted in significantly (P < 0.05) reduced stomatal conductance (gs), leaf transpiration rate (E), guard cell length, and abscisic acid (ABA)-induced reactive oxygen species (ROS) accumulation in guard cells. Moreover, CrSAL1 overexpressing plants showed significantly increased net photosynthetic rate (A), gs, and E as well as most of the stomatal traits and ABA-induced ROS production in guard cells compared to the wild-type (WT) plants. Taken together, our optimized CRISPR/Cas9 system provides a useful tool for functional genomics in a model fern species, allowing the exploration of fern gene functions for evolutionary biology, herbal medicine discovery, and agricultural applications.

Indexed as

CRISPR-Cas SystemsFernsGene EditingGerm Cells, PlantPlants, Genetically ModifiedTransformation, Genetic

Identifiers

PMID39268871
PMCPMC11638000

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.