Evidence map›Paper›PMID 39266588›Full record

ArticleScientific reports2024

Rhizosphere microbiomes derived from vermicompost alter gene expression and regulatory pathways in tomato (Solanum lycopersicum, L.).

J Garcia, M Moravek, T Fish, T Thannhauser, Z Fei, J P Sparks, J Giovannoni, J Kao-Kniffin

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

J GarciaSchool of Integrative Plant Science, Cornell University, 135 Plant Science Building, Ithaca, NY, 14850, USA.
M MoravekSchool of Integrative Plant Science, Cornell University, 135 Plant Science Building, Ithaca, NY, 14850, USA.
T FishUSDA Robert W. Holley Center for Agriculture & Health, Ithaca, NY, 14850, USA.
T ThannhauserUSDA Robert W. Holley Center for Agriculture & Health, Ithaca, NY, 14850, USA.
Z FeiBoyce Thompson Institute, Ithaca, NY, 14850, USA.
J P SparksDepartment of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, 14850, USA.
J GiovannoniUSDA Robert W. Holley Center for Agriculture & Health, Ithaca, NY, 14850, USA.
J Kao-KniffinSchool of Integrative Plant Science, Cornell University, 135 Plant Science Building, Ithaca, NY, 14850, USA. jtk57@cornell.edu.

Funding

National Science Foundation (NSF-GRFP) [DGE-1650441]USDA Agriculture and Food Research Initiative Grant [2016-67013-24414]
6 · The paper itself

Abstract

The gut microbiome of worms from composting facilities potentially harbors organisms that are beneficial to plant growth and development. In this experiment, we sought to examine the potential impacts of rhizosphere microbiomes derived from Eisenia fetida worm castings (i.e. vermicompost) on tomato (Solanum lycopersicum, L.) plant growth and physiology. Our experiment consisted of a greenhouse trial lasting 17 weeks total in which tomato plants were grown with one of three inoculant treatments: a microbial inoculant created from vermicompost (V), a microbial inoculant created from sterilized vermicompost (SV), and a no-compost control inoculant (C). We hypothesized that living microbiomes from the vermicompost inoculant treatment would enhance host plant growth and gene expression profiles compared to plants grown in sterile and control treatments. Our data showed that bacterial community composition was significantly altered in tomato rhizospheres, but fungal community composition was highly variable in each treatment. Plant phenotypes that were significantly enhanced in the vermicompost and sterile vermicompost treatments, compared to the control, included aboveground biomass and foliar δ

Indexed as

MicrobiotaRhizosphereSoil MicrobiologySolanum lycopersicumAnimalsBacteriaCompostingGene Expression Regulation, PlantOligochaetaPlant RootsRhizosphere microbiomeRNA-SeqTomato (Solanum lycopersicum L.)Vermicompost

Identifiers

PMID39266588
PMCPMC11393070

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.