Evidence map›Paper›PMID 39266584›Full record

ArticleScientific reports2024

Transcriptome analysis reveals activation of detoxification and defense mechanisms in smoke-exposed Merlot grape (Vitis vinifera) berries.

Seanna Hewitt, Mackenzie Aragon, P Layton Ashmore, Thomas S Collins, Amit Dhingra

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Transcription Profiling of Glycosyltransferases inJournal of agricultural and food chemistry · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Seanna HewittDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, USA.
Mackenzie AragonDepartment of Viticulture and Enology, Washington State University, Richland, WA, 99354, USA.
P Layton AshmoreDepartment of Viticulture and Enology, Washington State University, Richland, WA, 99354, USA.
Thomas S CollinsDepartment of Viticulture and Enology, Washington State University, Richland, WA, 99354, USA.
Amit DhingraDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, USA. amit.dhingra@ag.tamu.edu.

Funding

Agricultural Research Service NACA #58-2072-0-033Texas A and M University Start up FundsUSDA Hatch Grant WNP00011
6 · The paper itself

Abstract

A significant consequence of climate change is the rising incidence of wildfires. When wildfires occur close to wine grape (Vitis vinifera) production areas, smoke-derived volatile phenolic compounds can be taken up by the grape berries, negatively affecting the flavor and aroma profile of the resulting wine and compromising the production value of entire vineyards. Evidence for the permeation of smoke-associated compounds into grape berries has been provided through metabolomics; however, the basis for grapevines' response to smoke at the gene expression level has not been investigated in detail. To address this knowledge gap, we employed time-course RNA sequencing to observe gene expression-level changes in grape berries in response to smoke exposure. Significant increases in gene expression (and enrichment of gene ontologies) associated with detoxification of reactive compounds, maintenance of redox homeostasis, and cell wall fortification were observed in response to smoke. These findings suggest that the accumulation of volatile phenols from smoke exposure activates mechanisms that render smoke-derived compounds less reactive while simultaneously fortifying intracellular defense mechanisms. The results of this work lend a better understanding of the molecular basis for grapevines' response to smoke and provide insight into the origins of smoke-taint-associated flavor and aroma attributes in wine produced from smoke-exposed grapes.

Indexed as

FruitGene Expression ProfilingGene Expression Regulation, PlantSmokeVitisInactivation, MetabolicPhenolsTranscriptomeVolatile Organic CompoundsWildfiresPhenolsSmokeVolatile Organic CompoundsGlutathione-S-transferaseRedox homeostasisSmoke taintTranscriptomicsUDP-glycosyltransferaseViticultureVolatile phenols

Identifiers

PMID39266584
PMCPMC11393342

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.