Evidence map›Paper›PMID 39263286›Full record

ArticleTranslational pediatrics2024

Identification of novel mitophagy-related biomarkers for Kawasaki disease by integrated bioinformatics and machine-learning algorithms.

Yan Wang, Ying Liu, Nana Wang, Zhiheng Liu, Guanghui Qian, Xuan Li, Hongbiao Huang, Wenyu Zhuo, Lei Xu, Jiaying Zhang and 2 more

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Article in Translational pediatrics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Yan Wang *Institute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China.
Ying Liu *Institute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China.
Nana Wang *Department of Cardiology, Children's Hospital of Soochow University, Suzhou, China.
Zhiheng LiuDepartment of Cardiology, Children's Hospital of Soochow University, Suzhou, China.
Guanghui QianInstitute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China.
Xuan LiDepartment of Cardiology, Children's Hospital of Soochow University, Suzhou, China.
Hongbiao HuangDepartment of Pediatrics, Fujian Provincial Hospital, Fujian Provincial Clinical College of Fujian Medical University, Fuzhou, China.
Wenyu ZhuoInstitute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China.
Lei XuInstitute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China.
Jiaying ZhangInstitute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China.
Haitao Lv *Institute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China.
Yang Gao *Institute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Kawasaki disease (KD) is a systemic vasculitis primarily affecting the coronary arteries in children. Despite growing attention to its symptoms and pathogenesis, the exact mechanisms of KD remain unclear. Mitophagy plays a critical role in inflammation regulation, however, its significance in KD has only been minimally explored. This study sought to identify crucial mitophagy-related biomarkers and their mechanisms in KD, focusing on their association with immune cells in peripheral blood. Methods: This research used four datasets from the Gene Expression Omnibus (GEO) database that were categorized as the merged and validation datasets. Screening for differentially expressed mitophagy-related genes (DE-MRGs) was conducted, followed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. A weighted gene co-expression network analysis (WGCNA) identified the hub module, while machine-learning algorithms [random forest-recursive feature elimination (RF-RFE) and support vector machine-recursive feature elimination (SVM-RFE)] pinpointed the hub genes. Receiver operating characteristic (ROC) curves were generated for these genes. Additionally, the CIBERSORT algorithm was used to assess the infiltration of 22 immune cell types to explore their correlations with hub genes. Interactions between transcription factors (TFs), genes, and Gene-microRNAs (miRNAs) of hub genes were mapped using the NetworkAnalyst platform. The expression difference of the hub genes was validated using quantitative reverse transcriptase polymerase chain reaction (qRT-PCR). Results: Initially, 306 DE-MRGs were identified between the KD patients and healthy controls. The enrichment analysis linked these MRGs to autophagy, mitochondrial function, and inflammation. The WGCNA revealed a hub module of 47 KD-associated DE-MRGs. The machine-learning algorithms identified cytoskeleton-associated protein 4 ( Conclusions:

Indexed as

bioinformatics analysisimmune cell infiltrationKawasaki disease (KD)machine learningmitophagy

Identifiers

PMID39263286
PMCPMC11384439

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.