ginmappeR: an unified approach for integrating gene and protein identifiers across biological sequence databases.

Fernando Sola, Daniel Ayala, Marina Pulido, Rafael Ayala, Lorena López-Cerero, Inma Hernández, David Ruiz

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Article in Bioinformatics advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Fernando SolaSCORE Lab, DEAL, University of Seville, ETSII, 41012 Seville, Spain.ORCID https://orcid.org/0000-0003-1685-3270

Daniel AyalaSCORE Lab, DEAL, University of Seville, ETSII, 41012 Seville, Spain.ORCID https://orcid.org/0000-0003-2095-1009

Marina PulidoDepartment of Microbiology, University of Seville, 41009 Seville, Spain.ORCID https://orcid.org/0000-0003-1633-4294

Rafael AyalaMolecular Cryo-Electron Microscopy Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa 904-0411, Japan.ORCID https://orcid.org/0000-0002-9332-4623

Lorena López-CereroDepartment of Microbiology, University of Seville, 41009 Seville, Spain.ORCID https://orcid.org/0000-0001-8950-4384

Inma HernándezSCORE Lab, DEAL, University of Seville, ETSII, 41012 Seville, Spain.ORCID https://orcid.org/0000-0001-8920-6635

David RuizSCORE Lab, DEAL, University of Seville, ETSII, 41012 Seville, Spain.ORCID https://orcid.org/0000-0003-4460-5493

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Summary: The proliferation of biological sequence data, due to developments in molecular biology techniques, has led to the creation of numerous open access databases on gene and protein sequencing. However, the lack of direct equivalence between identifiers across these databases difficults data integration. To address this challenge, we introduce Availability and implementation: from Bioconductor: https://bioconductor.org/packages/ginmappeR.

Identifiers

PMID39262905

DOI10.1093/bioadv/vbae129

PMCPMC11387618

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.