Evidence map›Paper›PMID 39261639›Full record

ArticleNature methods2024

Self-inspired learning for denoising live-cell super-resolution microscopy.

Liying Qu, Shiqun Zhao, Yuanyuan Huang, Xianxin Ye, Kunhao Wang, Yuzhen Liu, Xianming Liu, Heng Mao, Guangwei Hu, Wei Chen and 6 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Liying Qu *Innovation Photonics and Imaging Center, School of Instrumentation Science and Engineering, Harbin Institute of Technology, Harbin, China.
Shiqun Zhao *State Key Laboratory of Membrane Biology, Beijing Key Laboratory of Cardiometabolic Molecular Medicine, Institute of Molecular Medicine, National Biomedical Imaging Center, School of Future Technology, Peking University, Beijing, China.
Yuanyuan Huang *Innovation Photonics and Imaging Center, School of Instrumentation Science and Engineering, Harbin Institute of Technology, Harbin, China.
Xianxin YeState Key Laboratory of Membrane Biology, Beijing Key Laboratory of Cardiometabolic Molecular Medicine, Institute of Molecular Medicine, National Biomedical Imaging Center, School of Future Technology, Peking University, Beijing, China.
Kunhao WangState Key Laboratory of Membrane Biology, Beijing Key Laboratory of Cardiometabolic Molecular Medicine, Institute of Molecular Medicine, National Biomedical Imaging Center, School of Future Technology, Peking University, Beijing, China.
Yuzhen LiuInnovation Photonics and Imaging Center, School of Instrumentation Science and Engineering, Harbin Institute of Technology, Harbin, China.
Xianming LiuSchool of Computer Science and Technology, Harbin Institute of Technology, Harbin, China.ORCID http://orcid.org/0000-0002-8857-1785
Heng MaoSchool of Mathematical Sciences, Peking University, Beijing, China.
Guangwei HuSchool of Electrical and Electronic Engineering, Nanyang Technological University, Singapore, Singapore.ORCID http://orcid.org/0000-0002-3023-9632
Wei ChenSchool of Mechanical Science and Engineering, Advanced Biomedical Imaging Facility, Huazhong University of Science and Technology, Wuhan, China.ORCID http://orcid.org/0009-0009-3037-2810
Changliang GuoState Key Laboratory of Membrane Biology, Beijing Key Laboratory of Cardiometabolic Molecular Medicine, Institute of Molecular Medicine, National Biomedical Imaging Center, School of Future Technology, Peking University, Beijing, China.ORCID http://orcid.org/0000-0001-6724-9060
Jiaye HeNational Innovation Center for Advanced Medical Devices, Shenzhen, China.ORCID http://orcid.org/0000-0001-8692-2708
Jiubin TanKey Laboratory of Ultra-precision Intelligent Instrumentation of Ministry of Industry and Information Technology, Harbin Institute of Technology, Harbin, China.
Haoyu LiInnovation Photonics and Imaging Center, School of Instrumentation Science and Engineering, Harbin Institute of Technology, Harbin, China.ORCID http://orcid.org/0000-0002-0004-9336
Liangyi ChenState Key Laboratory of Membrane Biology, Beijing Key Laboratory of Cardiometabolic Molecular Medicine, Institute of Molecular Medicine, National Biomedical Imaging Center, School of Future Technology, Peking University, Beijing, China.ORCID http://orcid.org/0000-0003-1270-7321
Weisong ZhaoInnovation Photonics and Imaging Center, School of Instrumentation Science and Engineering, Harbin Institute of Technology, Harbin, China. weisongzhao@hit.edu.cn.ORCID http://orcid.org/0000-0002-5969-1956

Funding

National Natural Science Foundation of China (National Science Foundation of China) 62305083
6 · The paper itself

Abstract

Every collected photon is precious in live-cell super-resolution (SR) microscopy. Here, we describe a data-efficient, deep learning-based denoising solution to improve diverse SR imaging modalities. The method, SN2N, is a Self-inspired Noise2Noise module with self-supervised data generation and self-constrained learning process. SN2N is fully competitive with supervised learning methods and circumvents the need for large training set and clean ground truth, requiring only a single noisy frame for training. We show that SN2N improves photon efficiency by one-to-two orders of magnitude and is compatible with multiple imaging modalities for volumetric, multicolor, time-lapse SR microscopy. We further integrated SN2N into different SR reconstruction algorithms to effectively mitigate image artifacts. We anticipate SN2N will enable improved live-SR imaging and inspire further advances.

Indexed as

Image Processing, Computer-AssistedAlgorithmsAnimalsArtifactsDeep LearningHumansMicroscopyMicroscopy, FluorescenceSignal-To-Noise RatioTime-Lapse Imaging

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.