Evidence map›Paper›PMID 39261460›Full record

ArticleNature communications2024

RNA-mediated double-strand break repair by end-joining mechanisms.

Youngkyu Jeon, Yilin Lu, Margherita Maria Ferrari, Tejasvi Channagiri, Penghao Xu, Chance Meers, Yiqi Zhang, Sathya Balachander, Vivian S Park, Stefania Marsili and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Alternative splicing dynamics in pig tissues under soybean oil supplementation.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Article
  2. Article
  3. Article
  4. DNA polymerase I: structure, activity, and function in bacterial DNA replication and repair.Critical reviews in biochemistry and molecular biology · 2026
    Review
  5. Expression of EndonucleaseCurrent issues in molecular biology · 2026
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Antibacterial carbon dots.Materials today. Bio · 2025
    Review
  11. Review
  12. RNA Structure: Past, Future, and Gene Therapy Applications.International journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Youngkyu JeonSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0000-0002-6223-2187
Yilin Lu *School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0009-0001-1510-3024
Margherita Maria Ferrari *Department of Mathematics and Statistics, University of South Florida, Tampa, FL, USA.ORCID 0000-0002-9780-363X
Tejasvi Channagiri *Department of Mathematics and Statistics, University of South Florida, Tampa, FL, USA.
Penghao Xu *School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0000-0001-6760-144X
Chance MeersSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.ORCID 0000-0003-2554-3987
Yiqi ZhangSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.
Sathya BalachanderSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.
Vivian S ParkDepartment of Biochemistry and Molecular Biology, Tulane Cancer Center, Tulane University of Medicine, New Orleans, LA, USA.
Stefania MarsiliSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA.
Zachary F PursellDepartment of Biochemistry and Molecular Biology, Tulane Cancer Center, Tulane University of Medicine, New Orleans, LA, USA.ORCID 0000-0001-5871-7192
Nataša JonoskaDepartment of Mathematics and Statistics, University of South Florida, Tampa, FL, USA. jonoska@usf.edu.ORCID 0000-0003-0765-9425
Francesca StoriciSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA. storici@gatech.edu.ORCID 0000-0003-4640-3350

Funding

Investigation of human DNA polymerase epsilon variantsR01ES028271 · NIEHS · TULANE UNIVERSITY OF LOUISIANA · PI Zachary F Pursell · 2017 to 2026
$3.6M
RNA-mediated DNA break repairR01GM115927 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI STORICI, FRANCESCA · 2015 to 2018
$1.2M
Howard Hughes Medical Institute (HHMI) 55108574NIEHS NIH HHS R01 ES028271NIGMS NIH HHS R01 GM115927U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) ES02827U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM115927
6 · The paper itself

Abstract

Double-strand breaks (DSBs) in DNA are challenging to repair. Cells employ at least three DSB-repair mechanisms, with a preference for non-homologous end joining (NHEJ) over homologous recombination (HR) and microhomology-mediated end joining (MMEJ). While most eukaryotic DNA is transcribed into RNA, providing complementary genetic information, much remains unknown about the direct impact of RNA on DSB-repair outcomes and its role in DSB-repair via end joining. Here, we show that both sense and antisense-transcript RNAs impact DSB repair in a sequence-specific manner in wild-type human and yeast cells. Depending on its sequence complementarity with the broken DNA ends, a transcript RNA can promote repair of a DSB or a double-strand gap in its DNA gene via NHEJ or MMEJ, independently from DNA synthesis. The results demonstrate a role of transcript RNA in directing the way DSBs are repaired in DNA, suggesting that RNA may directly modulate genome stability and evolution.

Indexed as

DNA Breaks, Double-StrandedDNA End-Joining RepairSaccharomyces cerevisiaeGenomic InstabilityHumansRNARNA, AntisenseSaccharomyces cerevisiae ProteinsRNARNA, AntisenseSaccharomyces cerevisiae Proteins

Identifiers

PMID39261460
PMCPMC11390984

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.