Evidence map›Paper›PMID 39261062›Full record

ArticleMicrobes and environments2024

Does Rhizobial Inoculation Change the Microbial Community in Field Soils? A‍ ‍Comparison with Agricultural Land-use Changes.

Shintaro Hara, Kaori Kakizaki, Masaru Bamba, Manabu Itakura, Masayuki Sugawara, Atsuo Suzuki, Yuma Sasaki, Masanori Takeda, Kanako Tago, Tsubasa Ohbayashi and 11 more

Abstract readComparative Study
In one paragraph

Article in Microbes and environments, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Shintaro HaraInstitute for Agro-Environmental Sciences (NIAES), National Agriculture and Food Research Organization (NARO).
Kaori KakizakiGraduate School of Life Sciences, Tohoku University.
Masaru BambaGraduate School of Life Sciences, Tohoku University.
Manabu ItakuraGraduate School of Life Sciences, Tohoku University.
Masayuki SugawaraDepartment of Life and Food Sciences, Obihiro University of Agriculture and Veterinary Medicine.
Atsuo SuzukiGraduate School of Life Sciences, Tohoku University.
Yuma SasakiInstitute for Agro-Environmental Sciences (NIAES), National Agriculture and Food Research Organization (NARO).
Masanori TakedaInstitute for Agro-Environmental Sciences (NIAES), National Agriculture and Food Research Organization (NARO).
Kanako TagoInstitute for Agro-Environmental Sciences (NIAES), National Agriculture and Food Research Organization (NARO).
Tsubasa OhbayashiInstitute for Agro-Environmental Sciences (NIAES), National Agriculture and Food Research Organization (NARO).
Toshihiro AonoInstitute for Agro-Environmental Sciences (NIAES), National Agriculture and Food Research Organization (NARO).
Luciano Nobuhiro AoyagiInstitute for Agro-Environmental Sciences (NIAES), National Agriculture and Food Research Organization (NARO).
Hiroaki ShimadaInstitute for Agro-Environmental Sciences (NIAES), National Agriculture and Food Research Organization (NARO).
Ryo ShingubaraResearch Center for Advanced Analysis (NAAC), National Agriculture and Food Research Organization (NARO).
Sachiko MasudaRIKEN Center for Sustainable Resource Science.
Arisa ShibataRIKEN Center for Sustainable Resource Science.
Ken ShirasuRIKEN Center for Sustainable Resource Science.
Rota WagaiInstitute for Agro-Environmental Sciences (NIAES), National Agriculture and Food Research Organization (NARO).
Hiroko AkiyamaInstitute for Agro-Environmental Sciences (NIAES), National Agriculture and Food Research Organization (NARO).
Shusei SatoGraduate School of Life Sciences, Tohoku University.
Kiwamu MinamisawaGraduate School of Life Sciences, Tohoku University.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although microbial inoculation may be effective for sustainable crop production, detrimental aspects have been argued because of the potential of inoculated microorganisms to behave as invaders and negatively affect the microbial ecosystem. We herein compared the impact of rhizobial inoculation on the soil bacterial community with that of agricultural land-use changes using a 16S rRNA amplicon ana-lysis. Soybean plants were cultivated with and without five types of bradyrhizobial inoculants (Bradyrhizobium diazoefficiens or Bradyrhizobium ottawaense) in experimental fields of Andosol, and the high nodule occupancy (35-72%) of bradyrhizobial inoculants was confirmed by nosZ PCR. However, bradyrhizobial inoculants did not significantly affect Shannon's diversity index (α-diversity) or shifts (β-diversity) in the bacterial community in the soils. Moreover, the soil bacterial community was significantly affected by land-use types (conventional cropping, organic cropping, and original forest), where β-diversity correlated with soil chemical properties (pH, carbon, and nitrogen contents). Therefore, the effects of bradyrhizobial inoculation on bacterial communities in bulk soil were minor, regardless of high nodule occupancy. We also observed a correlation between the relative abundance of bacterial classes (Alphaproteobacteria, Gammaproteobacteria, and Gemmatimonadetes) and land-use types or soil chemical properties. The impact of microbial inoculation on soil microbial ecosystems has been exami-ned to a limited extent, such as rhizosphere communities and viability. In the present study, we found that bacterial community shifts in soil were more strongly affected by land usage than by rhizobial inoculation. Therefore, the results obtained herein highlight the importance of assessing microbial inoculants in consideration of the entire land management system.

Indexed as

AgricultureBacteriaBradyrhizobiumGlycine maxMicrobiotaRNA, Ribosomal, 16SSoilSoil MicrobiologyAgricultural InoculantsBiodiversityDNA, BacterialDNA, BacterialRNA, Ribosomal, 16SSoil16S rRNA amplicon sequenceBradyrhizobiumland usagerhizobial inoculationsoil bacterial community

Identifiers

PMID39261062
PMCPMC11427313

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.