Evidence map›Paper›PMID 39259742›Full record

ArticlePloS one2024

Transcriptional control of a stem cell factor nucleostemin in liver regeneration and aging.

Xiaoqin Liu, Junying Wang, Fang Li, Nikolai Timchenko, Robert Y L Tsai

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Xiaoqin LiuInstitute of Biosciences and Technology, Texas A&M Health, Houston, TX, United States of America.
Junying WangInstitute of Biosciences and Technology, Texas A&M Health, Houston, TX, United States of America.
Fang LiInstitute of Biosciences and Technology, Texas A&M Health, Houston, TX, United States of America.
Nikolai TimchenkoDepartment of Surgery, Cincinnati Children Hospital Medical Center, University of Cincinnati, Cincinnati, OH, United States of America.
Robert Y L TsaiInstitute of Biosciences and Technology, Texas A&M Health, Houston, TX, United States of America.ORCID 0000-0002-8357-0812

Funding

Aging Effect on Genome Maintenance during Hepatocyte RegenerationR21AG052006 · NIA · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI TSAI, ROBERT Y · 2016 to 2017
$408k
NIA NIH HHS R21 AG052006
6 · The paper itself

Abstract

Nucleostemin (NS) plays a role in liver regeneration, and aging reduces its expression in the baseline and regenerating livers following 70% partial hepatectomy (PHx). Here we interrogate the mechanism controlling NS expression during liver regeneration and aging. The NS promoter was analyzed by TRANSFAC. Functional studies were performed using cell-based luciferase assay, endogenous NS expression in Hep3B cells, mouse livers with a gain-of-function mutation of C/EBPα (S193D), and mouse livers with C/EBPα knockdown. We found a CAAT box with four C/EBPα binding sites (-1216 to -735) and a GC box with consensus binding sites for c-Myc, E2F1, and p300-associated protein complex (-633 to -1). Age-related changes in NS expression correlated positively with the expression of c-Myc, E2F1, and p300, and negatively with that of C/EBPα and C/EBPβ. PHx upregulated NS expression at 1d, coinciding with an increase in E2F1 and a decrease in C/EBPα. C/EBPα bound to the consensus sequences found in the NS promoter in vitro and in vivo, inhibited its transactivational activity in a binding site-dependent manner, and decreased the expression of endogenous NS in Hep3B cells. In vivo activation of C/EBPα by the S193D mutation resulted in a 4th-day post-PHx reduction of NS, a feature shared by 16-m/o livers. Finally, C/EBPα knockdown increased its expression in aged (24-m/o) livers under both baseline and regeneration conditions. This study reports the C/EBPα suppression of NS expression in aged livers, providing a new perspective on the mechanistic orchestration of tissue homeostasis in aging.

Indexed as

AgingGTP-Binding ProteinsLiver RegenerationNuclear ProteinsPromoter Regions, GeneticProto-Oncogene Proteins c-mycAnimalsBinding SitesCarrier ProteinsCCAAT-Enhancer-Binding Protein-alphaCCAAT-Enhancer-Binding Protein-betaCell Line, TumorE1A-Associated p300 ProteinE2F1 Transcription FactorGene Expression RegulationHepatectomyCarrier ProteinsCCAAT-Enhancer-Binding Protein-alphaCCAAT-Enhancer-Binding Protein-betaE1A-Associated p300 ProteinE2f1 protein, mouseE2F1 Transcription FactorEp300 protein, mouseGTP-Binding ProteinsNuclear Proteinsnucleostemin protein, mouseProto-Oncogene Proteins c-mycRNA-Binding Proteins

Identifiers

PMID39259742
PMCPMC11389944

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.