Evidence map›Paper›PMID 39258386›Full record

ArticleChemMedChem2024

Structural Basis for Inhibition of the SARS-CoV-2 nsp16 by Substrate-Based Dual Site Inhibitors.

Gints Kalnins, Laura Rudusa, Anna L Bula, Diana Zelencova-Gopejenko, Olga Bobileva, Mihails Sisovs, Kaspars Tars, Aigars Jirgensons, Kristaps Jaudzems, Raitis Bobrovs

Abstract read
In one paragraph

Article in ChemMedChem, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Gints KalninsLatvian Biomedical Research and Study Centre, Ratsupites 1 k-1, LV1067, Riga, Latvia.
Laura RudusaLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV1006, Latvia.
Anna L BulaLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV1006, Latvia.
Diana Zelencova-GopejenkoLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV1006, Latvia.
Olga BobilevaLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV1006, Latvia.
Mihails SisovsLatvian Biomedical Research and Study Centre, Ratsupites 1 k-1, LV1067, Riga, Latvia.
Kaspars TarsLatvian Biomedical Research and Study Centre, Ratsupites 1 k-1, LV1067, Riga, Latvia.
Aigars JirgensonsLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV1006, Latvia.
Kristaps JaudzemsLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV1006, Latvia.
Raitis BobrovsLatvian Institute of Organic Synthesis, Aizkraukles 21, Riga, LV1006, Latvia.ORCID 0000-0002-0221-8658

Funding

DIAMOND Light Source mx35587HZB BESSY II MX-222-00329-STMinistry of Economics of the Republic of Latvia"State research project in the field of biomedicine, medical technologies and pharmacy" VPP-EM-BIOMEDICĪNA-2022/1-0001
6 · The paper itself

Abstract

Coronaviruses, including SARS-CoV-2, possess an mRNA 5' capping apparatus capable of mimicking the natural eukaryotic capping signature. Two SAM-dependent methylating enzymes play important roles in this process: nsp14 methylates the N7 of the guanosine cap, and nsp16-nsp10 methylates the 2'-O- of subsequent nucleotides of viral mRNA. The 2'-O-methylation performed by nsp16-nsp10 is crucial for the escape of the viral RNA from innate immunity. Inhibition of this enzymatic activity has been proposed as a way to combat coronaviruses. In this study, we employed X-ray crystallography to analyze the binding of the SAM analogues to the active site of nsp16-nsp10. We obtained eleven 3D crystal structures of the nsp16-nsp10 complexes with SAM-derived inhibitors, demonstrated different conformations of the methionine substituting part of the molecules, and confirmed that simultaneous dual-site targeting of both SAM and RNA sites correlates with higher inhibitory potential.

Indexed as

MethyltransferasesSARS-CoV-2Viral Nonstructural ProteinsAntiviral AgentsBinding SitesCatalytic DomainCrystallography, X-RayEnzyme InhibitorsHumansModels, MolecularS-AdenosylmethionineViral Regulatory and Accessory ProteinsAntiviral AgentsEnzyme InhibitorsMethyltransferasesNSP16 protein, SARS-CoV-2ORF1ab polyprotein, SARS-CoV-2S-AdenosylmethionineViral Nonstructural ProteinsViral Regulatory and Accessory ProteinsMedicinal chemistryMethyltransferasensp16SARS-CoV-2Structural biology

Identifiers

PMID39258386
PMCPMC11648818

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.