Evidence map›Paper›PMID 39257781›Full record

ArticlebioRxiv : the preprint server for biology2024

A dual ribosomal system in the zebrafish soma and germline.

Arish N Shah, Friederike Leesch, Laura Lorenzo-Orts, Lorenz Grundmann, Maria Novatchkova, David Haselbach, Eliezer Calo, Andrea Pauli

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Arish N ShahDepartment of Biology, Massachusetts Institute of Technology, Cambridge, United States.ORCID 0000-0002-4036-9772
Friederike LeeschResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.ORCID 0000-0003-4705-6944
Laura Lorenzo-OrtsResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.ORCID 0000-0001-9532-630X
Lorenz GrundmannResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.ORCID 0000-0002-0365-5913
Maria NovatchkovaResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.ORCID 0000-0002-8462-7171
David HaselbachResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.ORCID 0000-0002-5276-5633
Eliezer CaloDepartment of Biology, Massachusetts Institute of Technology, Cambridge, United States.ORCID 0000-0002-3006-2742
Andrea PauliResearch Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.ORCID 0000-0001-9646-2303

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MATTHEW G. VANDER HEIDEN · 1985 to 2026
$93.9M
Mechanisms regulating ribosome assembly and function in stem cells and vertebrate development.R35GM142634 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Eliezer Calo-Velazquez · 2021 to 2026
$2.3M
NCI NIH HHS P30 CA014051NIGMS NIH HHS R35 GM142634
6 · The paper itself

Abstract

Protein synthesis during vertebrate embryogenesis is driven by ribosomes of two distinct origins: maternal ribosomes synthesized during oogenesis and stored in the egg, and somatic ribosomes, produced by the developing embryo after zygotic genome activation (ZGA). In zebrafish, these two ribosome types are expressed from different genomic loci and also differ in their ribosomal RNA (rRNA) sequence. To characterize this dual ribosome system further, we examined the expression patterns of maternal and somatic rRNAs during embryogenesis and in adult tissues. We found that maternal rRNAs are not only expressed during oogenesis but are continuously produced in the zebrafish germline. Proteomic analyses of maternal and somatic ribosomes unveiled differences in core ribosomal protein composition. Most nucleotide differences between maternal and somatic rRNAs are located in the flexible, structurally not resolved expansion segments. Our in vivo data demonstrated that both maternal and somatic ribosomes can be translationally active in the embryo. Using transgenically tagged maternal or somatic ribosome subunits, we experimentally confirm the presence of hybrid 80S ribosomes composed of 40S and 60S subunits from both origins and demonstrate the preferential in vivo association of maternal ribosomes with germline-specific transcripts. Our study identifies a distinct type of ribosomes in the zebrafish germline and thus presents a foundation for future explorations into possible regulatory mechanisms and functional roles of heterogeneous ribosomes.

Indexed as

dual ribosome systemgermlinePGCsribosome heterogeneityzebrafish

Identifiers

PMID39257781
PMCPMC11383705

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.