Evidence map›Paper›PMID 39257452›Full record

ArticleProceedings of SPIE--the International Society for Optical Engineering2023

Non-invasive classification of IDH mutation status of gliomas from multi-modal MRI using a 3D convolutional neural network.

Satrajit Chakrabarty, Pamela LaMontagne, Joshua Shimony, Daniel S Marcus, Aristeidis Sotiras

Abstract read
In one paragraph

Article in Proceedings of SPIE--the International Society for Optical Engineering, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Satrajit ChakrabartyDepartment of Electrical and Systems Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Pamela LaMontagneMallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Joshua ShimonyMallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Daniel S MarcusMallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Aristeidis SotirasMallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA.

Funding

Sustaining the Integrative Imaging Informatics for Cancer Research (I3CR) CenterU24CA258483 · NCI · WASHINGTON UNIVERSITY · PI Daniel Scott Marcus · 2021 to 2026
$4.4M
INTEGRATIVE IMAGING INFORMATICS FOR CANCER RESEARCHU24CA204854 · NCI · WASHINGTON UNIVERSITY · PI MARCUS, DANIEL SCOTT, WAHL, RICHARD LEO · 2016 to 2020
$3.0M
NINDS CENTER CORE FOR BRAIN IMAGINGP30NS098577 · NINDS · WASHINGTON UNIVERSITY · PI HERSHEY, TAMARA G, MARCUS, DANIEL SCOTT · 2016 to 2019
$2.4M
NCI NIH HHS U24 CA204854NCI NIH HHS U24 CA258483NINDS NIH HHS P30 NS098577
6 · The paper itself

Abstract

Glioma is the most common form of brain tumor with a high degree of heterogeneity in imaging characteristics, treatment-response, and survival rate. An important factor causing this heterogeneity is the mutation of isocitrate dehydrogenase (IDH) enzyme. The current clinical gold-standard for identifying IDH mutation status involves invasive procedures that involve risk, may fail to capture intra-tumoral spatial heterogeneity or can be inaccessible in low-resource settings. In this study, we propose a deep learning-based method to non-invasively and pre-operatively determine IDH status of high- and low-grade gliomas by leveraging their phenotypical characteristics from volumetric MRI scans. For this purpose, we propose a 3D Mask R-CNN-based approach to simultaneously detect and segment glioma as well as classify its IDH status - thus obviating the requirement of any separate tumor segmentation step. The network can operate on routinely acquired MRI sequences and is agnostic to glioma grade. It was trained on patient-cases from publicly available datasets (

Indexed as

convolutional neural networkdeep learninggliomaIsocitrate DehydrogenaseMask R-CNNneuro-oncologytumor classificationtumor detectiontumor segmentation

Identifiers

PMID39257452
PMCPMC11386985

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.