Evidence map›Paper›PMID 39256560›Full record

ArticleThe EMBO journal2024

Nitrogen signaling factor triggers a respiration-like gene expression program in fission yeast.

Shin Ohsawa, Michaela Schwaiger, Vytautas Iesmantavicius, Rio Hashimoto, Hiromitsu Moriyama, Hiroaki Matoba, Go Hirai, Mikiko Sodeoka, Atsushi Hashimoto, Akihisa Matsuyama and 3 more

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Shin OhsawaFriedrich Miescher Institute for Biomedical Research, Fabrikstrasse 24, 4056, Basel, Switzerland.
Michaela SchwaigerFriedrich Miescher Institute for Biomedical Research, Fabrikstrasse 24, 4056, Basel, Switzerland.
Vytautas IesmantaviciusFriedrich Miescher Institute for Biomedical Research, Fabrikstrasse 24, 4056, Basel, Switzerland.
Rio HashimotoChemical Genomics Research Group, RIKEN Center for Sustainable Resource Science, Wako, 351-0198, Saitama, Japan.
Hiromitsu MoriyamaGraduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, 183-8538, Tokyo, Japan.ORCID http://orcid.org/0000-0001-7678-8015
Hiroaki MatobaGraduate School of Pharmaceutical Sciences, Kyushu University, Maidashi Higashi-ku, 812-8582, Fukuoka, Japan.ORCID http://orcid.org/0000-0002-7063-9403
Go HiraiGraduate School of Pharmaceutical Sciences, Kyushu University, Maidashi Higashi-ku, 812-8582, Fukuoka, Japan.ORCID http://orcid.org/0000-0003-3420-555X
Mikiko SodeokaCatalysis and Integrated Research Group, RIKEN Center for Sustainable Resource Science, Wako, 351-0198, Saitama, Japan.ORCID http://orcid.org/0000-0002-1344-364X
Atsushi HashimotoChemical Genomics Research Group, RIKEN Center for Sustainable Resource Science, Wako, 351-0198, Saitama, Japan.
Akihisa MatsuyamaChemical Genomics Research Group, RIKEN Center for Sustainable Resource Science, Wako, 351-0198, Saitama, Japan.ORCID http://orcid.org/0000-0002-6135-6276
Minoru YoshidaChemical Genomics Research Group, RIKEN Center for Sustainable Resource Science, Wako, 351-0198, Saitama, Japan.ORCID http://orcid.org/0000-0002-4376-5674
Yoko YashirodaChemical Genomics Research Group, RIKEN Center for Sustainable Resource Science, Wako, 351-0198, Saitama, Japan. ytyy@riken.jp.ORCID http://orcid.org/0000-0003-3279-141X
Marc BühlerFriedrich Miescher Institute for Biomedical Research, Fabrikstrasse 24, 4056, Basel, Switzerland. marc.buehler@fmi.ch.ORCID http://orcid.org/0000-0001-6661-9795

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 18H02131MEXT | Japan Society for the Promotion of Science (JSPS) 19K15755MEXT | Japan Society for the Promotion of Science (JSPS) 22K05397MEXT | Japan Society for the Promotion of Science (JSPS) 23H04882MEXT | Japan Society for the Promotion of Science (JSPS) 23H05473Ohsumi Frontier Science Foundation (OFSF) na
6 · The paper itself

Abstract

Microbes have evolved intricate communication systems that enable individual cells of a population to send and receive signals in response to changes in their immediate environment. In the fission yeast Schizosaccharomyces pombe, the oxylipin nitrogen signaling factor (NSF) is part of such communication system, which functions to regulate the usage of different nitrogen sources. Yet, the pathways and mechanisms by which NSF acts are poorly understood. Here, we show that NSF physically interacts with the mitochondrial sulfide:quinone oxidoreductase Hmt2 and that it prompts a change from a fermentation- to a respiration-like gene expression program without any change in the carbon source. Our results suggest that NSF activity is not restricted to nitrogen metabolism alone and that it could function as a rheostat to prepare a population of S. pombe cells for an imminent shortage of their preferred nutrients.

Indexed as

Gene Expression Regulation, FungalNitrogenSchizosaccharomycesSchizosaccharomyces pombe ProteinsSignal TransductionNitrogenSchizosaccharomyces pombe ProteinsCell-to-Cell CommunicationFission YeastMitochondrial RespirationNitrogen Catabolite RepressionNitrogen Signaling Factor

Identifiers

PMID39256560
PMCPMC11480445

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.