Evidence map›Paper›PMID 39255453›Full record

ArticleJournal of the American Chemical Society2024

Cell-Free Nonequilibrium Assembly for Hierarchical Protein/Peptide Nanopillars.

Jiaqi Guo, Ayisha Zia, Qianfeng Qiu, Michael Norton, Kangqiang Qiu, Junichi Usuba, Zhiyu Liu, Meihui Yi, Shane T Rich-New, Michael Hagan and 5 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jiaqi GuoDepartment of Chemistry, Brandeis University, 415 South St., Waltham, Massachusetts 02453, United States.ORCID 0000-0002-0254-0401
Ayisha ZiaDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, Alabama 35294, United States.
Qianfeng QiuDepartment of Chemistry, Brandeis University, 415 South St., Waltham, Massachusetts 02453, United States.
Michael NortonDepartment of Physics, Brandeis University, Waltham, Massachusetts 02453, United States.
Kangqiang QiuDepartment of Cancer Biology, Center for Chemical Imaging in Biomedicine, Advanced Cell Analysis Service Center, University of Cincinnati College of Medicine, Cincinnati, Ohio 45267, United States.
Junichi UsubaDepartment of Chemistry, Brandeis University, 415 South St., Waltham, Massachusetts 02453, United States.
Zhiyu LiuDepartment of Chemistry, Brandeis University, 415 South St., Waltham, Massachusetts 02453, United States.
Meihui YiDepartment of Chemistry, Brandeis University, 415 South St., Waltham, Massachusetts 02453, United States.ORCID 0000-0002-1912-1043
Shane T Rich-NewDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, Alabama 35294, United States.
Michael HaganDepartment of Physics, Brandeis University, Waltham, Massachusetts 02453, United States.ORCID 0000-0002-9211-2434
Seth FradenDepartment of Physics, Brandeis University, Waltham, Massachusetts 02453, United States.
Grace D HanDepartment of Chemistry, Brandeis University, 415 South St., Waltham, Massachusetts 02453, United States.
Jiajie DiaoDepartment of Cancer Biology, Center for Chemical Imaging in Biomedicine, Advanced Cell Analysis Service Center, University of Cincinnati College of Medicine, Cincinnati, Ohio 45267, United States.ORCID 0000-0003-4288-3203
Fengbin WangDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, Alabama 35294, United States.ORCID 0000-0003-1008-663X
Bing XuDepartment of Chemistry, Brandeis University, 415 South St., Waltham, Massachusetts 02453, United States.ORCID 0000-0002-4639-387X

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Omer Jamy · 1985 to 2026
$165.9M
Subcellular Enzyme-instructed self-assembly for molecular anticancer nanomedicinesR01CA142746 · NCI · BRANDEIS UNIVERSITY · PI Bing Xu · 2010 to 2026
$6.4M
Acquisition of cryo-electron microscopeS10OD024978 · OD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DOKLAND, TERJE · 2020 to 2020
$2.0M
Understanding and using microbial conductive nanowiresR00GM138756 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WANG, FENGBIN · 2022 to 2024
$895k
Understanding and using microbial conductive nanowiresK99GM138756 · NIGMS · UNIVERSITY OF VIRGINIA · PI WANG, FENGBIN · 2021 to 2022
$130k
NCI NIH HHS 75N91019D00024NCI NIH HHS P30 CA013148NCI NIH HHS R01 CA142746NIGMS NIH HHS K99 GM138756NIGMS NIH HHS R00 GM138756NIH HHS S10 OD024978
6 · The paper itself

Abstract

Cells contain intricate protein nanostructures, but replicating them outside of cells presents challenges. One such example is the vertical fibronectin pillars observed in embryos. Here, we demonstrate the creation of cell-free vertical fibronectin pillar mimics using nonequilibrium self-assembly. Our approach utilizes enzyme-responsive phosphopeptides that assemble into nanotubes. Enzyme action triggers shape changes in peptide assemblies, driving the vertical growth of protein nanopillars into bundles. These bundles, with peptide nanotubes serving as a template to remodel fibronectin, can then recruit collagen, which forms aggregates or bundles depending on their types. Nanopillar formation relies on enzyme-catalyzed nonequilibrium self-assembly and is governed by the concentrations of enzyme, protein, peptide, the structure of the peptide, and peptide assembly morphologies. Cryo-EM reveals unexpected nanotube thinning and packing after dephosphorylation, indicating a complex sculpting process during assembly. Our study demonstrates a cell-free method for constructing intricate, multiprotein nanostructures with directionality and composition.

Indexed as

PeptidesFibronectinsNanostructuresNanotubesPhosphopeptidesFibronectinsPeptidesPhosphopeptides

Identifiers

PMID39255453
PMCPMC11669155

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.