Evidence map›Paper›PMID 39255011›Full record

ArticleJMIR medical informatics2024

Automated Identification of Postoperative Infections to Allow Prediction and Surveillance Based on Electronic Health Record Data: Scoping Review.

Siri Lise van der Meijden, Anna M van Boekel, Harry van Goor, Rob Ghh Nelissen, Jan W Schoones, Ewout W Steyerberg, Bart F Geerts, Mark Gj de Boer, M Sesmu Arbous

Abstract readScoping Review
In one paragraph

Article in JMIR medical informatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Siri Lise van der MeijdenIntensive Care Unit, Leiden University Medical Center, Leiden, Netherlands.ORCID https://orcid.org/0000-0002-9343-0899
Anna M van BoekelIntensive Care Unit, Leiden University Medical Center, Leiden, Netherlands.ORCID https://orcid.org/0000-0003-0774-0995
Harry van GoorGeneral Surgery Department, Radboud University Medical Center, Nijmegen, Netherlands.ORCID https://orcid.org/0000-0003-0323-4876
Rob Ghh NelissenDepartment of Orthopedics, Leiden University Medical Center, Leiden, Netherlands.ORCID https://orcid.org/0000-0003-1228-4162
Jan W SchoonesDirectorate of Research Policy, Leiden University Medical Center, Leiden, Netherlands.ORCID https://orcid.org/0000-0003-1120-4781
Ewout W SteyerbergDepartment of Biomedical Data Sciences, Leiden University Medical Center, Leiden, Netherlands.ORCID https://orcid.org/0000-0002-7787-0122
Bart F GeertsHealthplus.ai BV, Amsterdam, Netherlands.ORCID https://orcid.org/0000-0002-0210-7202
Mark Gj de BoerDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, Netherlands.ORCID https://orcid.org/0000-0002-5009-6499
M Sesmu ArbousIntensive Care Unit, Leiden University Medical Center, Leiden, Netherlands.ORCID https://orcid.org/0000-0001-5242-3257

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPostoperative infections remain a crucial challenge in health care, resulting in high morbidity, mortality, and costs. Accurate identification and labeling of patients with postoperative bacterial infections is crucial for developing prediction models, validating biomarkers, and implementing surveillance systems in clinical practice.

objectiveThis scoping review aimed to explore methods for identifying patients with postoperative infections using electronic health record (EHR) data to go beyond the reference standard of manual chart review.

methodsWe performed a systematic search strategy across PubMed, Embase, Web of Science (Core Collection), the Cochrane Library, and Emcare (Ovid), targeting studies addressing the prediction and fully automated surveillance (ie, without manual check) of diverse bacterial infections in the postoperative setting. For prediction modeling studies, we assessed the labeling methods used, categorizing them as either manual or automated. We evaluated the different types of EHR data needed for the surveillance and labeling of postoperative infections, as well as the performance of fully automated surveillance systems compared with manual chart review.

resultsWe identified 75 different methods and definitions used to identify patients with postoperative infections in studies published between 2003 and 2023. Manual labeling was the predominant method in prediction modeling research, 65% (49/75) of the identified methods use structured data, and 45% (34/75) use free text and clinical notes as one of their data sources. Fully automated surveillance systems should be used with caution because the reported positive predictive values are between 0.31 and 0.76.

conclusionsThere is currently no evidence to support fully automated labeling and identification of patients with infections based solely on structured EHR data. Future research should focus on defining uniform definitions, as well as prioritizing the development of more scalable, automated methods for infection detection using structured EHR data.

Indexed as

artificial intelligencebacterialchart reviewEHREHRselectronic health recordinfectioninfectionsmachine learningpostoperativepostoperative infectionspredictpredictionpredictionspredictiverecordrecordsreview methodologyreview methodsscopingscoping reviewsearchsearchessearchingsurgerysurgicalsurveillancesynthesis

Identifiers

PMID39255011
PMCPMC11422734

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.