Evidence map›Paper›PMID 39254330›Full record

ArticleApplied and environmental microbiology2024

Genomic analysis of conjugative and chromosomally integrated mobile genetic elements in oral streptococci.

Erica Lee, Erin Priutt, Seth Woods, Allison Quick, Shawn King, Lisa K McLellan, Robert C Shields

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Erica LeeNew York Institute of Technology College of Osteopathic Medicine, Jonesboro, Arkansas, USA.
Erin PriuttDepartment of Biological Sciences, Arkansas State University, Jonesboro, Arkansas, USA.
Seth WoodsDepartment of Biological Sciences, Arkansas State University, Jonesboro, Arkansas, USA.
Allison QuickDepartment of Biological Sciences, Arkansas State University, Jonesboro, Arkansas, USA.
Shawn KingDepartment of Biological Sciences, Arkansas State University, Jonesboro, Arkansas, USA.
Lisa K McLellanDepartment of Biological Sciences, Purdue University Fort Wayne, Fort Wayne, Indiana, USA.ORCID 0000-0001-6418-8039
Robert C ShieldsDepartment of Biological Sciences, Arkansas State University, Jonesboro, Arkansas, USA.ORCID 0000-0002-8823-9504

Funding

Mechanisms of Integrative and Conjugative Elements in Oral BacteriaR01DE033403 · NIDCR · UNIVERSITY OF FLORIDA · PI Lisa K McLellan, Robert Colquhoun Shields · 2024 to 2026
$1.1M
Exploring Integrative Conjugative Elements in the Biology and Ecology of Oral StreptococciR03DE029882 · NIDCR · ARKANSAS STATE UNIVERSITY · PI SHIELDS, ROBERT COLQUHOUN · 2021 to 2022
$270k
HHS | NIH | National Institute of Dental and Craniofacial Research (NIDCR) R01DE033403HHS | NIH | National Institute of Dental and Craniofacial Research (NIDCR) R03DE029882NIDCR NIH HHS R01 DE033403NIDCR NIH HHS R03 DE029882
6 · The paper itself

Abstract

This study aimed to investigate the diversity of conjugative and chromosomally integrated mobile genetic elements (cciMGEs) within six oral streptococci species. cciMGEs, including integrative and conjugative elements (ICEs) and integrative and mobilizable elements (IMEs), are stably maintained on the host cell chromosome; however, under certain conditions, they are able to excise, form extrachromosomal circles, and transfer via a conjugation apparatus. Many cciMGEs encode "cargo" functions that aid survival in new niches and evolve new antimicrobial resistance or virulence properties, whereas others have been shown to influence host bacterial physiology. Here, using a workflow employing preexisting bioinformatics tools, we analyzed 551 genomes for the presence of cciMGEs across six common health- and disease-associated oral streptococci. We identified 486 cciMGEs, 173 of which were ICEs and 233 of which were IMEs. The cciMGEs were diverse in size, cargo genes, and relaxase types. We identified several novel relaxase proteins and a widespread IME carrying a small multidrug resistance transporter. Additionally, we provide evidence that several of the bioinformatically predicted cciMGEs encoded within various

Indexed as

Conjugation, GeneticGenome, BacterialInterspersed Repetitive SequencesMouthStreptococcusChromosomes, BacterialGenomicsHumansantimicrobial resistanceconjugationhorizontal gene transferintegrative and conjugative elementoral microbiomeoral streptococcivirulence factors

Identifiers

PMID39254330
PMCPMC11497809

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.