Evidence map›Paper›PMID 39253479›Full record

ArticlebioRxiv : the preprint server for biology2025

AcrIF11 is a potent CRISPR-specific ADP-ribosyltransferase encoded by phage and plasmid.

Daphne F Chen, Leah T Roe, Yuping Li, Adair L Borges, Jenny Y Zhang, Palak Babbar, Sourobh Maji, Maisie G V Stevens, Galen J Correy, Morgan E Diolaiti and 6 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Daphne F ChenDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA.ORCID 0000-0002-5571-3548
Leah T RoeDepartment of Chemistry, University of California, Berkeley, CA.ORCID 0000-0002-2487-5587
Yuping LiDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA.ORCID 0000-0003-2057-3271
Adair L BorgesArcadia Science, Berkeley, CA, USA.ORCID 0000-0002-1477-7908
Jenny Y ZhangDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA.
Palak BabbarDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.
Sourobh MajiDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.
Maisie G V StevensHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, CA.ORCID 0009-0004-9732-0349
Galen J CorreyDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA.ORCID 0000-0001-5155-7325
Morgan E DiolaitiHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, CA.ORCID 0000-0001-5900-3060
Dominique H SmithHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, CA.
Alan AshworthHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, CA.ORCID 0000-0003-1446-7878
Robert M StroudDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.ORCID 0000-0003-2083-5665
Mark J S KellyDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA.ORCID 0000-0003-3209-1018
Joseph Bondy-DenomyDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA.ORCID 0000-0002-4909-9481
James S FraserDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA.ORCID 0000-0002-5080-2859

Funding

Targeting Viroporins and Coronavirus M ProteinU19AI171110 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI James Solomon Fraser · 2022 to 2026
$103.4M
Equipment for Discovering and Manipulating Macromolecular Conformational EnsemblesR35GM145238 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI James Solomon Fraser · 2022 to 2026
$3.1M
Molecular Biophysics Training GrantT32GM149436 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Aashish Manglik · 2023 to 2026
$1.6M
NIAID NIH HHS U19 AI171110NIGMS NIH HHS R35 GM145238NIGMS NIH HHS T32 GM149436
6 · The paper itself

Abstract

Phage-encoded anti-CRISPR (Acr) proteins inhibit CRISPR-Cas systems to allow phage replication and lysogeny maintenance. Most of the Acrs characterized to date are stable stoichiometric inhibitors. While enzymatic Acrs have been characterized biochemically, little is known about their potency, specificity, and reversibility. Here, we examine AcrIF11, a widespread phage and plasmid-encoded ADP-ribosyltransferase (ART) that inhibits the Type I-F CRISPR-Cas system. We present an NMR structure of an AcrIF11 homolog that reveals chemical shift perturbations consistent with NAD (cofactor) binding. In experiments that model both lytic phage replication and MGE/lysogen stability under high targeting pressure, AcrIF11 is a highly potent CRISPR-Cas inhibitor and more robust to Cas protein level fluctuations than stoichiometric inhibitors. Furthermore, we demonstrate that AcrIF11 is remarkably specific, predominantly ADP-ribosylating Csy1 when expressed in

Identifiers

PMID39253479
PMCPMC11383003

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.