Evidence map›Paper›PMID 39253442›Full record

ArticlebioRxiv : the preprint server for biology2024

Genetically encoded fluorescent reporter for polyamines.

Pushkal Sharma, Colin Y Kim, Heather R Keys, Shinya Imada, Alex B Joseph, Luke Ferro, Tenzin Kunchok, Rachel Anderson, Omer Yilmaz, Jing-Ke Weng and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Pushkal SharmaWhitehead Institute of Biomedical Research, Cambridge, MA, USA.
Colin Y KimWhitehead Institute of Biomedical Research, Cambridge, MA, USA.
Heather R KeysWhitehead Institute of Biomedical Research, Cambridge, MA, USA.
Shinya ImadaThe David H. Koch Institute for Integrative Cancer Research at MIT, Cambridge, MA, USA.
Alex B JosephWhitehead Institute of Biomedical Research, Cambridge, MA, USA.
Luke FerroWhitehead Institute of Biomedical Research, Cambridge, MA, USA.
Tenzin KunchokWhitehead Institute of Biomedical Research, Cambridge, MA, USA.
Rachel AndersonWhitehead Institute of Biomedical Research, Cambridge, MA, USA.
Omer YilmazThe David H. Koch Institute for Integrative Cancer Research at MIT, Cambridge, MA, USA.
Jing-Ke WengWhitehead Institute of Biomedical Research, Cambridge, MA, USA.ORCID 0000-0003-3059-0075
Ankur JainWhitehead Institute of Biomedical Research, Cambridge, MA, USA.

Funding

Elucidating the molecular and cellular functions of polyaminesR35GM151111 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI Ankur Jain · 2023 to 2026
$1.9M
NIGMS NIH HHS R35 GM151111
6 · The paper itself

Abstract

Polyamines are abundant and evolutionarily conserved metabolites that are essential for life. Dietary polyamine supplementation extends life-span and health-span. Dysregulation of polyamine homeostasis is linked to Parkinson's disease and cancer, driving interest in therapeutically targeting this pathway. However, measuring cellular polyamine levels, which vary across cell types and states, remains challenging. We introduce a first-in-class genetically encoded polyamine reporter for real-time measurement of polyamine concentrations in single living cells. This reporter utilizes the polyamine-responsive ribosomal frameshift motif from the OAZ1 gene. We demonstrate broad applicability of this approach and reveal dynamic changes in polyamine levels in response to genetic and pharmacological perturbations. Using this reporter, we conducted a genome-wide CRISPR screen and uncovered an unexpected link between mitochondrial respiration and polyamine import, which are both risk factors for Parkinson's disease. By offering a new lens to examine polyamine biology, this reporter may advance our understanding of these ubiquitous metabolites and accelerate therapy development.

Identifiers

PMID39253442
PMCPMC11383275

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.