Evidence map›Paper›PMID 39251601›Full record

ArticleNature communications2024

Merlin

Charlotte D Eaton, Lauro Avalos, S John Liu, Zhenhong Chen, Naomi Zakimi, Tim Casey-Clyde, Paola Bisignano, Calixto-Hope G Lucas, Erica Stevenson, Abrar Choudhury and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Gallbladder Schwannoma: A Case Report and Literature Review.Diagnostics (Basel, Switzerland) · 2025
    Article
  7. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Charlotte D EatonDepartment of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.
Lauro AvalosDepartment of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.
S John LiuDepartment of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0003-1042-0191
Zhenhong ChenDepartment of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.
Naomi ZakimiDepartment of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.
Tim Casey-ClydeDepartment of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-9281-4073
Paola BisignanoDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0003-1789-762X
Calixto-Hope G LucasDepartment of Pathology, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0002-8347-9592
Erica StevensonJ. David Gladstone Institutes, California Institute for Quantitative Biosciences, San Francisco, CA, USA.
Abrar ChoudhuryDepartment of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0001-8312-2457
Harish N VasudevanDepartment of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0001-9633-1100
Stephen T MagillDepartment of Neurological Surgery, Northwestern University, Chicago, IL, USA.
Jacob S YoungDepartment of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA.
Nevan J KroganJ. David Gladstone Institutes, California Institute for Quantitative Biosciences, San Francisco, CA, USA.ORCID 0000-0003-4902-337X
Javier E Villanueva-MeyerDepartment of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.
Danielle L SwaneyJ. David Gladstone Institutes, California Institute for Quantitative Biosciences, San Francisco, CA, USA.ORCID 0000-0001-6119-6084
David R RaleighDepartment of Radiation Oncology, University of California San Francisco, San Francisco, CA, USA. david.raleigh@ucsf.edu.ORCID 0000-0001-9299-8864

Funding

Tissue CoreP50CA097257 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Susan M Chang · 2002 to 2026
$57.4M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007618 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 1985 to 2020
$29.6M
TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BADER, GARY D. · 2012 to 2024
$17.3M
Using Networks to Seed Hierarchical Whole-cell Models of CancerU54CA209891 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI IDEKER, TREY, KROGAN, NEVAN J · 2017 to 2021
$10.9M
Understanding druggable drivers of meningioma tumorigenesisR01CA262311 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RALEIGH, DAVID R · 2021 to 2025
$2.7M
Illumina NovaSeq 6000 Sequencing SystemS10OD028511 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHOW, ERIC D · 2020 to 2020
$583k
Investigating the Regulation and Role of FOXM1 in Aggressive MeningiomaF30CA246808 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHOUDHURY, ABRAR · 2020 to 2023
$159k
Development of a molecular diagnostic and prognostic signature for meningiomaF32CA213944 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MAGILL, STEPHEN T · 2017 to 2017
$63k
NCI NIH HHS F30 CA246808NCI NIH HHS F32 CA213944NCI NIH HHS P50 CA097257NCI NIH HHS R01 CA262311NCI NIH HHS U54 CA209891NIGMS NIH HHS P41 GM103504NIGMS NIH HHS T32 GM007618NIH HHS S10 OD028511
6 · The paper itself

Abstract

Meningiomas are associated with inactivation of NF2/Merlin, but approximately one-third of meningiomas with favorable clinical outcomes retain Merlin expression. Biochemical mechanisms underlying Merlin-intact meningioma growth are incompletely understood, and non-invasive biomarkers that may be used to guide treatment de-escalation or imaging surveillance are lacking. Here, we use single-cell RNA sequencing, proximity-labeling proteomic mass spectrometry, mechanistic and functional approaches, and magnetic resonance imaging (MRI) across meningioma xenografts and patients to define biochemical mechanisms and an imaging biomarker that underlie Merlin-intact meningiomas. We find Merlin serine 13 (S13) dephosphorylation drives meningioma Wnt signaling and tumor growth by attenuating inhibitory interactions with β-catenin and activating the Wnt pathway. MRI analyses show Merlin-intact meningiomas with S13 phosphorylation and favorable clinical outcomes are associated with high apparent diffusion coefficient (ADC). These results define mechanisms underlying a potential imaging biomarker that could be used to guide treatment de-escalation or imaging surveillance for patients with Merlin-intact meningiomas.

Indexed as

Magnetic Resonance ImagingMeningeal NeoplasmsMeningiomaNeurofibromin 2Wnt Signaling PathwayAnimalsbeta CateninBiomarkers, TumorCell Line, TumorFemaleHumansMaleMicePhosphorylationProteomicsSerinebeta CateninBiomarkers, TumorNeurofibromin 2Serine

Identifiers

PMID39251601
PMCPMC11383945

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.