Evidence map›Paper›PMID 39251587›Full record

ArticleNature communications2024

Human aneuploid cells depend on the RAF/MEK/ERK pathway for overcoming increased DNA damage.

Johanna Zerbib, Marica Rosaria Ippolito, Yonatan Eliezer, Giuseppina De Feudis, Eli Reuveni, Anouk Savir Kadmon, Sara Martin, Sonia Viganò, Gil Leor, James Berstler and 19 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Article
  3. Pretreatment Chromosomal Instability Correlates With Radiation Sensitivity in Squamous Cell Cancers.International journal of radiation oncology, biology, physics · 2026
    Article
  4. Chromosomal Instability Drives Glioblastoma Heterogeneity and Therapeutic Opportunities.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. PARP1 Suppression Drives ROS Resistance in Aneuploid Cancer Cells.bioRxiv : the preprint server for biology · 2026
    Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Johanna Zerbib *Department of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Marica Rosaria Ippolito *Department of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0000-0001-7310-1871
Yonatan EliezerDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Giuseppina De FeudisDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.
Eli ReuveniDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Anouk Savir KadmonDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Sara MartinDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.
Sonia ViganòDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0000-0003-0437-0087
Gil LeorDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
James BerstlerBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Julia MuenznerCharité Universitätsmedizin Berlin, Department of Biochemistry, Berlin, Germany.ORCID 0000-0002-5402-5890
Michael MüllederCharité Universitätsmedizin Berlin, Core Facility High-Throughput Mass Spectrometry, Berlin, Germany.ORCID 0000-0001-9792-3861
Emma M CampagnoloCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Eldad D ShulmanCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-1859-8819
Tiangen ChangCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0003-1485-1992
Carmela RubolinoCenter for Genomic Science of IIT@SEMM, Fondazione Instituto Italiano di Technologia, Milan, Italy.
Kathrin LaueDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Yael Cohen-SharirDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Simone ScorzoniDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.
Silvia TagliettiDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.
Alice RattiDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.
Chani StosselOncology Institute, Sheba Medical Center, Tel Hashomer, Israel.
Talia GolanOncology Institute, Sheba Medical Center, Tel Hashomer, Israel.
Francesco NicassioCenter for Genomic Science of IIT@SEMM, Fondazione Instituto Italiano di Technologia, Milan, Italy.ORCID 0000-0002-5954-5318
Eytan RuppinCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-7862-3940
Markus RalserCharité Universitätsmedizin Berlin, Department of Biochemistry, Berlin, Germany.ORCID 0000-0001-9535-7413
Francisca VazquezBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0002-2857-4685
Uri Ben-DavidDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel. ubendavid@tauex.tau.ac.il.ORCID 0000-0001-7098-2378
Stefano SantaguidaDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy. Stefano.santaguida@ieo.it.ORCID 0000-0002-1501-6190

Funding

Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) AIRC-MFAG 2018 - ID. 21665EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) ERC-SyG-2020 951475Israel Cancer Research Fund (Israel Cancer Research Fund, Inc.) NAIsrael Science Foundation (ISF) 1805/21United States - Israel Binational Science Foundation (BSF) 2019228
6 · The paper itself

Abstract

Aneuploidy is a hallmark of human cancer, yet the molecular mechanisms to cope with aneuploidy-induced cellular stresses remain largely unknown. Here, we induce chromosome mis-segregation in non-transformed RPE1-hTERT cells and derive multiple stable clones with various degrees of aneuploidy. We perform a systematic genomic, transcriptomic and proteomic profiling of 6 isogenic clones, using whole-exome DNA, mRNA and miRNA sequencing, as well as proteomics. Concomitantly, we functionally interrogate their cellular vulnerabilities, using genome-wide CRISPR/Cas9 and large-scale drug screens. Aneuploid clones activate the DNA damage response and are more resistant to further DNA damage induction. Aneuploid cells also exhibit elevated RAF/MEK/ERK pathway activity and are more sensitive to clinically-relevant drugs targeting this pathway, and in particular to CRAF inhibition. Importantly, CRAF and MEK inhibition sensitize aneuploid cells to DNA damage-inducing chemotherapies and to PARP inhibitors. We validate these results in human cancer cell lines. Moreover, resistance of cancer patients to olaparib is associated with high levels of RAF/MEK/ERK signaling, specifically in highly-aneuploid tumors. Overall, our study provides a comprehensive resource for genetically-matched karyotypically-stable cells of various aneuploidy states, and reveals a therapeutically-relevant cellular dependency of aneuploid cells.

Indexed as

AneuploidyDNA DamageMAP Kinase Signaling SystemPhthalazinesCell LineCell Line, TumorCRISPR-Cas SystemsDrug Resistance, NeoplasmHumansNeoplasmsPiperazinesProto-Oncogene Proteins c-rafraf KinasesolaparibPhthalazinesPiperazinesProto-Oncogene Proteins c-rafraf Kinases

Identifiers

PMID39251587
PMCPMC11385192

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.