Evidence map›Paper›PMID 39250428›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2024

Chromosome-level genome assembly of the medicinal insect Blaps rhynchopetera using Nanopore and Hi-C technologies.

Wei Zhang, Yue Li, Qi Wang, Qun Yu, Yuchen Ma, Lei Huang, Chenggui Zhang, Zizhong Yang, Jiapeng Wang, Huai Xiao

Erratum issuedAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Wei ZhangYunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, Dali 671000, Yunnan Province, People's Republic of China.ORCID 0009-0003-4466-1548
Yue LiYunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, Dali 671000, Yunnan Province, People's Republic of China.
Qi WangYunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, Dali 671000, Yunnan Province, People's Republic of China.
Qun YuYunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, Dali 671000, Yunnan Province, People's Republic of China.
Yuchen MaYunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, Dali 671000, Yunnan Province, People's Republic of China.
Lei HuangYunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, Dali 671000, Yunnan Province, People's Republic of China.
Chenggui ZhangYunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, Dali 671000, Yunnan Province, People's Republic of China.
Zizhong YangYunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, Dali 671000, Yunnan Province, People's Republic of China.
Jiapeng WangYunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, Dali 671000, Yunnan Province, People's Republic of China.
Huai XiaoYunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, Dali 671000, Yunnan Province, People's Republic of China.

Funding

Innovative Research Team of Yunnan Province Education DepartmentNational Natural Science Foundation of China 81960755Team Project of Yunnan Revitalization Talent Support Program 202305AS350001Yunnan Fundamental Research Projects 202301AU070128
6 · The paper itself

Abstract

Blaps rhynchopetera Fairmaire is a significant medicinal resource in southwestern China. We utilized Nanopore and Hi-C technologies in combination to generate a high-quality, chromosome-level assembly of the B. rhynchopetera genome and described its genetic features. Genome surveys revealed that B. rhynchopetera is a highly heterozygous species. The assembled genome was 379.24 Mb in size, of which 96.03% was assigned to 20 pseudochromosomes. A total of 212.93 Mb of repeat sequences were annotated, and 26,824 protein-coding genes and 837 noncoding RNAs were identified. Phylogenetic analysis indicated the divergence of the ancestors of B. rhynchopetera and its closely related species Tenebrio molitor at about 85.6 million years ago. The colinearity analysis showed that some chromosomes of B. rhynchopetera may have had fission events, and it has a good synteny relationship with Tribolium castaneum. Furthermore, in the enrichment analyses, the gene families related to detoxification and immunity of B. rhynchopetera facilitated the understanding of its environmental adaptations, which will serve as a valuable research resource for pest control strategies and conservation efforts of beneficial insects. This high-quality reference genome will also contribute to the conservation of insect species diversity and genetic resources.

Indexed as

Genome, InsectPhylogenyAnimalsChromosomes, InsectColeopteraGenomicsNanoporesB. rhynchopeterachromosome-level genome assemblyHi-CNanopore

Identifiers

PMID39250428
PMCPMC11555684

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.