Evidence map›Paper›PMID 39250149›Full record

ArticlePhysiological genomics2024

Investigative power of genomic informational field theory relative to genome-wide association studies for genotype-phenotype mapping.

Panagiota Kyratzi, Oswald Matika, Amey H Brassington, Connie E Clare, Juan Xu, David A Barrett, Richard D Emes, Alan L Archibald, Andras Paldi, Kevin D Sinclair and 2 more

Abstract read
In one paragraph

Article in Physiological genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Panagiota KyratziSchool of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington, United Kingdom.
Oswald MatikaDivision of Genetics and Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, Scotland, UK.
Amey H BrassingtonAgriculture and Horticulture Development Board, Middlemarch Business Park, East Coventry, United Kingdom.
Connie E ClareSchool of Biosciences, University of Nottingham, Sutton Bonington, United Kingdom.
Juan XuShanghai Leadingtac Pharmaceutical Company Limited, Shanghai, People's Republic of China.
David A BarrettSchool of Pharmacy, Centre for Analytical Bioscience, University of Nottingham, Nottingham, United Kingdom.
Richard D EmesNottingham Trent University, Nottingham, United Kingdom.
Alan L ArchibaldDivision of Genetics and Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, Scotland, UK.
Andras PaldiÉcole Pratique des Hautes Études, St-Antoine Research Center, PSL Research University, Inserm U938, Paris, France.
Kevin D SinclairAgriculture and Horticulture Development Board, Middlemarch Business Park, East Coventry, United Kingdom.
Jonathan WattisSchool of Mathematical Sciences, Centre for Mathematical Medicine and Biology, University of Nottingham, University Park, Nottingham, United Kingdom.
Cyril RauchSchool of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington, United Kingdom.ORCID 0000-0001-8584-420X

Funding

Transgenerational consequences of pre-conceptional and in utero exposure to real-life chemical mixtures on fertility and metabolic healthR01ES030374 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI EVANS, NEIL PRICE, LEA, RICHARD · 2020 to 2024
$2.3M
École Pratique des Hautes Études, Université de Recherche Paris Sciences et Lettres (EPHE) G007HHS | NIH | Advanced Research Projects Agency for Health (ARPA-H) R01 ES030374/ES/NIEHS 580 NIHNIEHS NIH HHS R01 ES030374UKRI | Biotechnology and Biological Sciences Research Council (BBSRC) BB/K017810/1UKRI | Biotechnology and Biological Sciences Research Council (BBSRC) BB/K017993/1
6 · The paper itself

Abstract

Identifying associations between phenotype and genotype is the fundamental basis of genetic analyses. Inspired by frequentist probability and the work of R. A. Fisher, genome-wide association studies (GWAS) extract information using averages and variances from genotype-phenotype datasets. Averages and variances are legitimated upon creating distribution density functions obtained through the grouping of data into categories. However, as data from within a given category cannot be differentiated, the investigative power of such methodologies is limited. Genomic informational field theory (GIFT) is a method specifically designed to circumvent this issue. The way GIFT proceeds is opposite to that of GWAS. Although GWAS determines the extent to which genes are involved in phenotype formation (bottom-up approach), GIFT determines the degree to which the phenotype can select microstates (genes) for its subsistence (top-down approach). Doing so requires dealing with new genetic concepts, a.k.a. genetic paths, upon which significance levels for genotype-phenotype associations can be determined. By using different datasets obtained in

Indexed as

Genome-Wide Association StudyGenotypePhenotypeGenetic Association StudiesGenomicsHumansInformation Theorycomplex traitsgenotype-phenotype mapping studiesGIFTGWAS

Identifiers

PMID39250149
PMCPMC11573261

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.