Evidence map›Paper›PMID 39249561›Full record

ArticleArchives of virology2024

Complete genome sequence of grapevine yellow speckle viroid 3, a novel apscaviroid infecting grapevine, characterized by high-throughput sequencing.

Malyaj R Prajapati, Pooja Thapa, Damini Diksha, Susheel Kumar Sharma, Nitika Gupta, Virendra Kumar Baranwal

Abstract read
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Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Malyaj R Prajapati *ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
Pooja Thapa *ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
Damini Diksha *ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
Susheel Kumar SharmaICAR-Indian Agricultural Research Institute, New Delhi, 110012, India. susheelsharma19@gmail.com.
Nitika GuptaICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
Virendra Kumar BaranwalICAR-Indian Agricultural Research Institute, New Delhi, 110012, India. vbaranwal2001@yahoo.com.ORCID http://orcid.org/0000-0002-5251-0905

Funding

Indian Council of Agricultural Research Ag.Edn.F.No./27/01/NP/2022-HRD
6 · The paper itself

Abstract

A novel grapevine viroid was discovered in an asymptomatic grapevine of Indian rootstocks. The whole genome sequence of the viroid (370 nt) was determined by high-throughput sequencing as well as RT-PCR followed by cloning and Sanger sequencing. The terminal conserved region (TCR), central conserved region (CCR) upper strand, and CCR lower strand are conserved regions found in the viroid that are unique to the members of the genus Apscaviroid. Based on our findings and the demarcation criteria for viroids, the novel viroid, which we have tentatively named "grapevine yellow speckle viroid 3" is a putative new member of the genus Apscaviroid.

Indexed as

Genome, ViralHigh-Throughput Nucleotide SequencingPhylogenyPlant DiseasesViroidsVitisBase SequenceRNA, ViralWhole Genome SequencingRNA, ViralApscaviroidHigh-throughput sequencingNovelRT-PCRViroid

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.