Evidence map›Paper›PMID 39247952›Full record

ArticleCancer discovery2024

Increased RNA and Protein Degradation Is Required for Counteracting Transcriptional Burden and Proteotoxic Stress in Human Aneuploid Cells.

Marica Rosaria Ippolito, Johanna Zerbib, Yonatan Eliezer, Eli Reuveni, Sonia Viganò, Giuseppina De Feudis, Eldad D Shulman, Anouk Savir Kadmon, Rachel Slutsky, Tiangen Chang and 19 more

Abstract read
In one paragraph

Article in Cancer discovery, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Review
  2. Article
  3. Chromosomal Instability Drives Glioblastoma Heterogeneity and Therapeutic Opportunities.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Investigating the Consequences of Aneuploidy in Cancer and Normal Tissue.Advances in experimental medicine and biology · 2026
    Review
  14. Article
  15. Article
  16. Review
  17. CommensalAnnual review of microbiology · 2025
    Review
  18. Article
  19. Article
  20. The Hallmarks of Aneuploidy in Cancer and Congenital Syndromes.Annual review of genomics and human genetics · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors.

Marica Rosaria Ippolito *Department of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0000-0001-7310-1871
Johanna Zerbib *Department of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0009-0000-0039-1484
Yonatan EliezerDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0009-0002-0515-7579
Eli ReuveniDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0009-0000-2899-0593
Sonia ViganòDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0000-0003-0437-0087
Giuseppina De FeudisDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0000-0002-5948-878X
Eldad D ShulmanCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland.ORCID 0000-0002-1859-8819
Anouk Savir KadmonDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0009-0007-6097-4391
Rachel SlutskyDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0009-0002-8409-5723
Tiangen ChangCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland.ORCID 0000-0003-1485-1992
Emma M CampagnoloCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland.ORCID 0009-0009-0031-5241
Silvia TagliettiDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0009-0007-8837-1648
Simone ScorzoniDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0000-0003-2046-2678
Sara GianottiDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0009-0002-7503-7601
Sara MartinDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0009-0003-7289-2028
Julia MuenznerDepartment of Biochemistry, Charité Universitätsmedizin Berlin, Berlin, Germany.ORCID 0000-0002-5402-5890
Michael MüllederCharité Universitätsmedizin Berlin, Core Facility High-Throughput Mass Spectrometry, Berlin, Germany.ORCID 0000-0001-9792-3861
Nir RozenblumDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0009-0009-0152-0247
Carmela RubolinoCenter for Genomic Science of IIT@SEMM, Fondazione Istituto Italiano di Tecnologia, Milan, Italy.ORCID 0009-0007-3753-462X
Tal Ben-YishayDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0009-0005-1305-0001
Kathrin LaueDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0009-0005-7132-6862
Yael Cohen-SharirDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0009-0009-0534-8368
Ilaria VigoritoDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0000-0001-9460-4654
Francesco NicassioCenter for Genomic Science of IIT@SEMM, Fondazione Istituto Italiano di Tecnologia, Milan, Italy.ORCID 0000-0002-5954-5318
Eytan RuppinCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland.ORCID 0000-0002-7862-3940
Markus RalserDepartment of Biochemistry, Charité Universitätsmedizin Berlin, Berlin, Germany.ORCID 0000-0001-9535-7413
Francisca VazquezBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-2857-4685
Stefano SantaguidaDepartment of Experimental Oncology at IEO, European Institute of Oncology IRCCS, Milan, Italy.ORCID 0000-0002-1501-6190
Uri Ben-DavidDepartment of Human Molecular Genetics and Biochemistry, Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0001-7098-2378

Funding

Azrieli Foundation (La Fondation Azrieli) NADOD Peer Reviewed Cancer Research Program (PRCRP) CA191148Fondazione AIRC per la ricerca sul cancro ETS (AIRC) 21665Fondazione Cariplo (Cariplo Foundation) NAHORIZON EUROPE European Research Council (ERC) 945674Intramural NIH HHS Z99 CA999999Israel Cancer Research Fund (ICRF) NAIsrael Science Foundation (ISF) 1805/21Italian Ministry of Health NARicerca Finalizzata GR-2018-12367077United States - Israel Binational Science Foundation (BSF) 2019228
6 · The paper itself

Abstract

Aneuploidy results in a stoichiometric imbalance of protein complexes that jeopardizes cellular fitness. Aneuploid cells thus need to compensate for the imbalanced DNA levels by regulating their RNA and protein levels, but the underlying molecular mechanisms remain unknown. In this study, we dissected multiple diploid versus aneuploid cell models. We found that aneuploid cells cope with transcriptional burden by increasing several RNA degradation pathways, and are consequently more sensitive to the perturbation of RNA degradation. At the protein level, aneuploid cells mitigate proteotoxic stress by reducing protein translation and increasing protein degradation, rendering them more sensitive to proteasome inhibition. These findings were recapitulated across hundreds of human cancer cell lines and primary tumors, and aneuploidy levels were significantly associated with the response of patients with multiple myeloma to proteasome inhibitors. Aneuploid cells are therefore preferentially dependent on several key nodes along the gene expression process, creating clinically actionable vulnerabilities in aneuploid cells. Significance: Aneuploidy is a hallmark of cancer that is associated with poor prognosis and worse drug response. We reveal that cells with extra chromosomes compensate for their imbalanced DNA content by altering their RNA and protein metabolism, rendering them more sensitive to perturbation of RNA and protein degradation. See related commentary by Bakhoum, p. 2315.

Indexed as

AneuploidyProteolysisCell Line, TumorGene Expression Regulation, NeoplasticHumansNeoplasmsProteotoxic StressRNARNA

Identifiers

PMID39247952
PMCPMC11611680

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.