Evidence map›Paper›PMID 39245735›Full record

ArticleScientific reports2024

An open-source tool for automated human-level circling behavior detection.

O R Stanley, A Swaminathan, E Wojahn, C Bao, Z M Ahmed, K E Cullen

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

O R StanleyDepartment of Biomedical Engineering, Johns Hopkins University, 720 Rutland Ave, Traylor 504, Baltimore, MD, 21205-2109, USA.
A Swaminathan *Department of Biomedical Engineering, Johns Hopkins University, 720 Rutland Ave, Traylor 504, Baltimore, MD, 21205-2109, USA.
E Wojahn *Department of Biomedical Engineering, Johns Hopkins University, 720 Rutland Ave, Traylor 504, Baltimore, MD, 21205-2109, USA.
C BaoDepartment of Biomedical Engineering, Johns Hopkins University, 720 Rutland Ave, Traylor 504, Baltimore, MD, 21205-2109, USA.
Z M AhmedDepartments of Otorhinolaryngology-Head and Neck Surgery, Biochemistry and Molecular Biology, Ophthalmology, University of Maryland School of Medicine, Baltimore, MD, USA.
K E CullenDepartment of Biomedical Engineering, Johns Hopkins University, 720 Rutland Ave, Traylor 504, Baltimore, MD, 21205-2109, USA. kathleen.cullen@jhu.edu.ORCID 0000-0002-9348-0933

Funding

The Physiology of Vestibular CompensationR01DC002390 · NIDCD · JOHNS HOPKINS UNIVERSITY · PI Kathleen E Cullen · 1995 to 2026
$10.7M
Training Program in Hearing and BalanceT32DC000023 · NIDCD · JOHNS HOPKINS UNIVERSITY · PI CULLEN, KATHLEEN E · 1989 to 2025
$8.7M
Usher Proteins in the Inner Ear Structure and FunctionR01DC012564 · NIDCD · UNIVERSITY OF MARYLAND BALTIMORE · PI Zubair M. Ahmed, Gregory I Frolenkov · 2013 to 2026
$7.0M
Neural Computations Underlying Cancellation of the Vestibular Consequences of Voluntary MovementR01DC018061 · NIDCD · JOHNS HOPKINS UNIVERSITY · PI Kathleen E Cullen · 2019 to 2026
$4.0M
Mechanism and Functional Significance of Polarity Reversal in Mechanosensory OrgansR01DC018304 · NIDCD · JACKSON LABORATORY · PI CULLEN, KATHLEEN E, EATOCK, RUTH ANNE · 2020 to 2024
$3.5M
NIDCD NIH HHS R01 DC002390NIDCD NIH HHS R01 DC012564NIDCD NIH HHS R01 DC018061NIDCD NIH HHS T32 DC000023NIH HHS 2T32DC000023NIH HHS R01DC012564
6 · The paper itself

Abstract

Quantitatively relating behavior to underlying biology is crucial in life science. Although progress in keypoint tracking tools has reduced barriers to recording postural data, identifying specific behaviors from this data remains challenging. Manual behavior coding is labor-intensive and inconsistent, while automatic methods struggle to explicitly define complex behaviors, even when they seem obvious to the human eye. Here, we demonstrate an effective technique for detecting circling in mice, a form of locomotion characterized by stereotyped spinning. Despite circling's extensive history as a behavioral marker, there currently exists no standard automated detection method. We developed a circling detection technique using simple postprocessing of keypoint data obtained from videos of freely-exploring (Cib2

Indexed as

Behavior, AnimalLocomotionAlgorithmsAnimalsHumansMiceSoftwareVideo Recording

Identifiers

PMID39245735
PMCPMC11381541

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.